Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE4Q8N205 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE4Q8N205 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE4Q8N205 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE4Q8N205 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SYNE4Q8N205 AC055876.3-201ENST00000431496 288 ntBASIC21.17■□□□□ 0.98
SYNE4Q8N205 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC21.17■□□□□ 0.98
SYNE4Q8N205 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
SYNE4Q8N205 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
SYNE4Q8N205 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC21.17■□□□□ 0.98
SYNE4Q8N205 PUDP-206ENST00000540122 825 ntTSL 2 BASIC21.17■□□□□ 0.98
SYNE4Q8N205 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE4Q8N205 AC138649.4-201ENST00000612222 287 ntBASIC21.17■□□□□ 0.98
SYNE4Q8N205 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE4Q8N205 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
SYNE4Q8N205 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE4Q8N205 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SYNE4Q8N205 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC21.17■□□□□ 0.98
SYNE4Q8N205 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.17■□□□□ 0.98
SYNE4Q8N205 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE4Q8N205 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE4Q8N205 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE4Q8N205 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE4Q8N205 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE4Q8N205 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE4Q8N205 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE4Q8N205 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE4Q8N205 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE4Q8N205 BOC-212ENST00000485230 2173 ntTSL 2 BASIC21.16■□□□□ 0.98
SYNE4Q8N205 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC21.16■□□□□ 0.98
SYNE4Q8N205 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE4Q8N205 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
SYNE4Q8N205 AC063926.2-201ENST00000623766 1308 ntBASIC21.16■□□□□ 0.98
SYNE4Q8N205 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE4Q8N205 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE4Q8N205 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE4Q8N205 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC21.16■□□□□ 0.98
SYNE4Q8N205 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.16■□□□□ 0.98
SYNE4Q8N205 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.16■□□□□ 0.98
SYNE4Q8N205 AL133373.2-201ENST00000623187 2828 ntBASIC21.16■□□□□ 0.98
SYNE4Q8N205 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE4Q8N205 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE4Q8N205 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC21.16■□□□□ 0.98
SYNE4Q8N205 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE4Q8N205 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE4Q8N205 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC21.16■□□□□ 0.98
SYNE4Q8N205 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SYNE4Q8N205 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 RAB34-224ENST00000636513 888 ntTSL 5 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SYNE4Q8N205 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SYNE4Q8N205 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SYNE4Q8N205 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC21.14■□□□□ 0.98
SYNE4Q8N205 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC21.14■□□□□ 0.98
SYNE4Q8N205 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SYNE4Q8N205 AKAP8P1-201ENST00000434743 1349 ntBASIC21.14■□□□□ 0.97
SYNE4Q8N205 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SYNE4Q8N205 AC236430.1-201ENST00000402231 743 ntBASIC21.14■□□□□ 0.97
SYNE4Q8N205 KRT18P32-201ENST00000424695 1287 ntBASIC21.14■□□□□ 0.97
SYNE4Q8N205 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC21.14■□□□□ 0.97
SYNE4Q8N205 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.14■□□□□ 0.97
SYNE4Q8N205 AC051619.7-201ENST00000568314 623 ntBASIC21.14■□□□□ 0.97
SYNE4Q8N205 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC21.14■□□□□ 0.97
SYNE4Q8N205 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC21.14■□□□□ 0.97
SYNE4Q8N205 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
SYNE4Q8N205 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC21.14■□□□□ 0.97
SYNE4Q8N205 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SYNE4Q8N205 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.14■□□□□ 0.97
SYNE4Q8N205 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC21.14■□□□□ 0.97
SYNE4Q8N205 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SYNE4Q8N205 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 AL353732.1-201ENST00000569618 1459 ntBASIC21.13■□□□□ 0.97
SYNE4Q8N205 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE4Q8N205 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms