Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 AC098831.1-202ENST00000438821 336 ntBASIC16.72■□□□□ 0.27
VRK3Q8IV63 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 AC079776.4-201ENST00000511039 504 ntBASIC16.72■□□□□ 0.27
VRK3Q8IV63 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 MIR1199-201ENST00000621445 119 ntBASIC16.72■□□□□ 0.27
VRK3Q8IV63 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 AC106886.4-201ENST00000623557 2502 ntBASIC16.72■□□□□ 0.27
VRK3Q8IV63 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.72■□□□□ 0.27
VRK3Q8IV63 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VRK3Q8IV63 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
VRK3Q8IV63 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
VRK3Q8IV63 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
VRK3Q8IV63 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.71■□□□□ 0.27
VRK3Q8IV63 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.71■□□□□ 0.27
VRK3Q8IV63 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VRK3Q8IV63 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.71■□□□□ 0.27
VRK3Q8IV63 AC087163.2-201ENST00000457299 853 ntBASIC16.71■□□□□ 0.27
VRK3Q8IV63 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.71■□□□□ 0.27
VRK3Q8IV63 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.71■□□□□ 0.27
VRK3Q8IV63 AC008667.4-201ENST00000607370 168 ntBASIC16.71■□□□□ 0.27
VRK3Q8IV63 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.71■□□□□ 0.27
VRK3Q8IV63 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VRK3Q8IV63 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.71■□□□□ 0.26
VRK3Q8IV63 AC009053.2-201ENST00000563701 2365 ntBASIC16.71■□□□□ 0.26
VRK3Q8IV63 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms