Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
KRT39Q6A163 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.49■□□□□ 0.55
KRT39Q6A163 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
KRT39Q6A163 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 AC105020.1-201ENST00000435356 2205 ntBASIC18.49■□□□□ 0.55
KRT39Q6A163 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.49■□□□□ 0.55
KRT39Q6A163 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.49■□□□□ 0.55
KRT39Q6A163 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.49■□□□□ 0.55
KRT39Q6A163 KRT18P27-201ENST00000427733 1299 ntBASIC18.49■□□□□ 0.55
KRT39Q6A163 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.49■□□□□ 0.55
KRT39Q6A163 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.49■□□□□ 0.55
KRT39Q6A163 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.49■□□□□ 0.55
KRT39Q6A163 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.49■□□□□ 0.55
KRT39Q6A163 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.49■□□□□ 0.55
KRT39Q6A163 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.49■□□□□ 0.55
KRT39Q6A163 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.49■□□□□ 0.55
KRT39Q6A163 TERC-201ENST00000602385 541 ntBASIC18.49■□□□□ 0.55
KRT39Q6A163 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 AC006504.4-201ENST00000592118 1568 ntBASIC18.49■□□□□ 0.55
KRT39Q6A163 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
KRT39Q6A163 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
KRT39Q6A163 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 AC005915.1-201ENST00000624912 2018 ntBASIC18.49■□□□□ 0.55
KRT39Q6A163 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
KRT39Q6A163 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
KRT39Q6A163 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
KRT39Q6A163 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
KRT39Q6A163 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
KRT39Q6A163 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
KRT39Q6A163 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
KRT39Q6A163 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
KRT39Q6A163 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.48■□□□□ 0.55
KRT39Q6A163 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
KRT39Q6A163 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.48■□□□□ 0.55
KRT39Q6A163 PTCHD3P3-201ENST00000403073 906 ntBASIC18.48■□□□□ 0.55
KRT39Q6A163 ELK2BP-201ENST00000415014 1224 ntBASIC18.48■□□□□ 0.55
KRT39Q6A163 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.48■□□□□ 0.55
KRT39Q6A163 HNRNPDP1-201ENST00000439535 754 ntBASIC18.48■□□□□ 0.55
KRT39Q6A163 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
KRT39Q6A163 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.48■□□□□ 0.55
KRT39Q6A163 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.48■□□□□ 0.55
KRT39Q6A163 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.48■□□□□ 0.55
KRT39Q6A163 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.48■□□□□ 0.55
KRT39Q6A163 AL160237.2-201ENST00000556165 472 ntBASIC18.48■□□□□ 0.55
KRT39Q6A163 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.48■□□□□ 0.55
KRT39Q6A163 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.48■□□□□ 0.55
KRT39Q6A163 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.48■□□□□ 0.55
KRT39Q6A163 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.48■□□□□ 0.55
KRT39Q6A163 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.48■□□□□ 0.55
KRT39Q6A163 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18.48■□□□□ 0.55
KRT39Q6A163 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.48■□□□□ 0.55
KRT39Q6A163 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.48■□□□□ 0.55
KRT39Q6A163 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.48■□□□□ 0.55
KRT39Q6A163 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.48■□□□□ 0.55
KRT39Q6A163 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
KRT39Q6A163 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
KRT39Q6A163 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.47■□□□□ 0.55
KRT39Q6A163 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.47■□□□□ 0.55
KRT39Q6A163 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.47■□□□□ 0.55
KRT39Q6A163 AC073621.1-201ENST00000392730 636 ntBASIC18.47■□□□□ 0.55
KRT39Q6A163 AP002469.2-201ENST00000531724 424 ntBASIC18.47■□□□□ 0.55
KRT39Q6A163 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.47■□□□□ 0.55
KRT39Q6A163 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.47■□□□□ 0.55
KRT39Q6A163 AC008735.5-201ENST00000623544 497 ntBASIC18.47■□□□□ 0.55
KRT39Q6A163 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.47■□□□□ 0.55
KRT39Q6A163 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.47■□□□□ 0.55
KRT39Q6A163 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
KRT39Q6A163 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
KRT39Q6A163 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms