Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC15.34■□□□□ 0.05
CLRN1P58418 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC15.34■□□□□ 0.05
CLRN1P58418 KRT18P31-201ENST00000506277 1292 ntBASIC15.34■□□□□ 0.05
CLRN1P58418 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.34■□□□□ 0.05
CLRN1P58418 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.34■□□□□ 0.05
CLRN1P58418 AC091304.2-201ENST00000564639 760 ntBASIC15.34■□□□□ 0.05
CLRN1P58418 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.34■□□□□ 0.05
CLRN1P58418 AP001269.4-201ENST00000609611 512 ntBASIC15.34■□□□□ 0.05
CLRN1P58418 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.34■□□□□ 0.05
CLRN1P58418 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 AC097637.2-201ENST00000624096 1997 ntBASIC15.34■□□□□ 0.05
CLRN1P58418 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CLRN1P58418 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CLRN1P58418 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.34■□□□□ 0.05
CLRN1P58418 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CLRN1P58418 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.34■□□□□ 0.05
CLRN1P58418 SIGLEC16-201ENST00000599858 1437 ntBASIC15.34■□□□□ 0.05
CLRN1P58418 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLRN1P58418 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.33■□□□□ 0.05
CLRN1P58418 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLRN1P58418 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
CLRN1P58418 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLRN1P58418 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLRN1P58418 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN1P58418 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN1P58418 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN1P58418 AC022211.2-201ENST00000585075 2527 ntBASIC15.33■□□□□ 0.04
CLRN1P58418 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN1P58418 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC15.33■□□□□ 0.04
CLRN1P58418 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.33■□□□□ 0.04
CLRN1P58418 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC15.33■□□□□ 0.04
CLRN1P58418 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.33■□□□□ 0.04
CLRN1P58418 PCDHA12-202ENST00000613593 2588 ntBASIC15.33■□□□□ 0.04
CLRN1P58418 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
CLRN1P58418 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.33■□□□□ 0.04
CLRN1P58418 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN1P58418 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN1P58418 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN1P58418 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN1P58418 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
CLRN1P58418 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CLRN1P58418 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC15.33■□□□□ 0.04
CLRN1P58418 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.32■□□□□ 0.04
CLRN1P58418 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.32■□□□□ 0.04
CLRN1P58418 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CLRN1P58418 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 EMD-201ENST00000369835 966 ntTSL 3 BASIC15.32■□□□□ 0.04
CLRN1P58418 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.32■□□□□ 0.04
CLRN1P58418 RBM17P3-201ENST00000417687 1192 ntBASIC15.32■□□□□ 0.04
CLRN1P58418 ACTG1P4-201ENST00000425123 1122 ntBASIC15.32■□□□□ 0.04
CLRN1P58418 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC15.32■□□□□ 0.04
CLRN1P58418 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC15.32■□□□□ 0.04
CLRN1P58418 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC15.32■□□□□ 0.04
CLRN1P58418 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC15.32■□□□□ 0.04
CLRN1P58418 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.32■□□□□ 0.04
CLRN1P58418 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
CLRN1P58418 GPR89P-201ENST00000407924 1495 ntBASIC15.32■□□□□ 0.04
CLRN1P58418 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC15.32■□□□□ 0.04
CLRN1P58418 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.32■□□□□ 0.04
CLRN1P58418 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.32■□□□□ 0.04
CLRN1P58418 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN1P58418 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.31■□□□□ 0.04
CLRN1P58418 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC15.31■□□□□ 0.04
CLRN1P58418 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms