Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
FOXA1P55317 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.6■□□□□ 0.25
FOXA1P55317 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.6■□□□□ 0.25
FOXA1P55317 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.6■□□□□ 0.25
FOXA1P55317 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.6■□□□□ 0.25
FOXA1P55317 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.6■□□□□ 0.25
FOXA1P55317 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
FOXA1P55317 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
FOXA1P55317 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
FOXA1P55317 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.59■□□□□ 0.25
FOXA1P55317 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.59■□□□□ 0.25
FOXA1P55317 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 HLA-A-202ENST00000376806 1854 ntBASIC16.59■□□□□ 0.25
FOXA1P55317 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.59■□□□□ 0.25
FOXA1P55317 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
FOXA1P55317 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
FOXA1P55317 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
FOXA1P55317 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.59■□□□□ 0.25
FOXA1P55317 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
FOXA1P55317 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.59■□□□□ 0.25
FOXA1P55317 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
FOXA1P55317 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.59■□□□□ 0.25
FOXA1P55317 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.59■□□□□ 0.25
FOXA1P55317 MIR3180-1-201ENST00000580374 94 ntBASIC16.59■□□□□ 0.25
FOXA1P55317 MIR3180-3-201ENST00000584616 94 ntBASIC16.59■□□□□ 0.25
FOXA1P55317 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 AC004817.3-201ENST00000602957 2129 ntBASIC16.59■□□□□ 0.25
FOXA1P55317 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.59■□□□□ 0.25
FOXA1P55317 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.59■□□□□ 0.25
FOXA1P55317 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.59■□□□□ 0.25
FOXA1P55317 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.59■□□□□ 0.25
FOXA1P55317 AC008894.3-201ENST00000624324 3103 ntBASIC16.59■□□□□ 0.25
FOXA1P55317 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
FOXA1P55317 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
FOXA1P55317 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.59■□□□□ 0.25
FOXA1P55317 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
FOXA1P55317 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
FOXA1P55317 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 AC092364.2-201ENST00000596710 2692 ntBASIC16.59■□□□□ 0.25
FOXA1P55317 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA1P55317 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
FOXA1P55317 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
FOXA1P55317 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
FOXA1P55317 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.58■□□□□ 0.25
FOXA1P55317 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
FOXA1P55317 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.58■□□□□ 0.25
FOXA1P55317 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.58■□□□□ 0.25
FOXA1P55317 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.25
FOXA1P55317 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.58■□□□□ 0.25
FOXA1P55317 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.25
FOXA1P55317 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
FOXA1P55317 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.58■□□□□ 0.24
FOXA1P55317 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.58■□□□□ 0.24
FOXA1P55317 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
FOXA1P55317 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.58■□□□□ 0.24
FOXA1P55317 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.58■□□□□ 0.24
FOXA1P55317 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.58■□□□□ 0.24
FOXA1P55317 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.58■□□□□ 0.24
FOXA1P55317 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.58■□□□□ 0.24
FOXA1P55317 DUX4L17-201ENST00000557360 1267 ntBASIC16.58■□□□□ 0.24
FOXA1P55317 AC074051.2-201ENST00000565115 352 ntBASIC16.58■□□□□ 0.24
FOXA1P55317 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
FOXA1P55317 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.58■□□□□ 0.24
FOXA1P55317 IER3-202ENST00000376377 1350 ntBASIC16.58■□□□□ 0.24
FOXA1P55317 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.58■□□□□ 0.24
FOXA1P55317 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.58■□□□□ 0.24
FOXA1P55317 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.58■□□□□ 0.24
FOXA1P55317 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms