Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.36■□□□□ 0.53
VCPP55072 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.36■□□□□ 0.53
VCPP55072 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.36■□□□□ 0.53
VCPP55072 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC18.36■□□□□ 0.53
VCPP55072 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VCPP55072 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.36■□□□□ 0.53
VCPP55072 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 AC106820.2-201ENST00000563775 3264 ntBASIC18.36■□□□□ 0.53
VCPP55072 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.36■□□□□ 0.53
VCPP55072 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.36■□□□□ 0.53
VCPP55072 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.36■□□□□ 0.53
VCPP55072 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.36■□□□□ 0.53
VCPP55072 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.36■□□□□ 0.53
VCPP55072 AC097374.2-201ENST00000618617 1306 ntBASIC18.36■□□□□ 0.53
VCPP55072 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.36■□□□□ 0.53
VCPP55072 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.36■□□□□ 0.53
VCPP55072 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VCPP55072 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VCPP55072 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.35■□□□□ 0.53
VCPP55072 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
VCPP55072 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
VCPP55072 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.35■□□□□ 0.53
VCPP55072 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.35■□□□□ 0.53
VCPP55072 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.35■□□□□ 0.53
VCPP55072 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.35■□□□□ 0.53
VCPP55072 AC138761.1-201ENST00000584393 385 ntBASIC18.35■□□□□ 0.53
VCPP55072 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.35■□□□□ 0.53
VCPP55072 AL078644.1-201ENST00000609881 752 ntBASIC18.35■□□□□ 0.53
VCPP55072 C20orf181-201ENST00000623918 480 ntBASIC18.35■□□□□ 0.53
VCPP55072 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.35■□□□□ 0.53
VCPP55072 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.35■□□□□ 0.53
VCPP55072 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.35■□□□□ 0.53
VCPP55072 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.35■□□□□ 0.53
VCPP55072 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCPP55072 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.34■□□□□ 0.53
VCPP55072 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VCPP55072 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.34■□□□□ 0.53
VCPP55072 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 AC002310.6-201ENST00000624451 1377 ntBASIC18.34■□□□□ 0.53
VCPP55072 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
VCPP55072 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VCPP55072 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.34■□□□□ 0.53
VCPP55072 AC108751.1-201ENST00000490852 363 ntBASIC18.34■□□□□ 0.53
VCPP55072 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.34■□□□□ 0.53
VCPP55072 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.34■□□□□ 0.53
VCPP55072 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.34■□□□□ 0.53
VCPP55072 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.34■□□□□ 0.53
VCPP55072 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VCPP55072 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.34■□□□□ 0.53
VCPP55072 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCPP55072 OR6D1P-202ENST00000641007 5290 ntBASIC18.34■□□□□ 0.53
VCPP55072 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.33■□□□□ 0.53
VCPP55072 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.53
VCPP55072 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
VCPP55072 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VCPP55072 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
VCPP55072 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.53
VCPP55072 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VCPP55072 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
VCPP55072 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.33■□□□□ 0.52
VCPP55072 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCPP55072 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VCPP55072 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCPP55072 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCPP55072 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.33■□□□□ 0.52
VCPP55072 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VCPP55072 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms