Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 PRELID1P1-202ENST00000567272 903 ntBASIC20.03■□□□□ 0.8
MRE11P49959 AC116407.2-201ENST00000613639 860 ntBASIC20.03■□□□□ 0.8
MRE11P49959 AC009949.1-201ENST00000623048 1830 ntBASIC20.03■□□□□ 0.8
MRE11P49959 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC20.03■□□□□ 0.8
MRE11P49959 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
MRE11P49959 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
MRE11P49959 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.03■□□□□ 0.8
MRE11P49959 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
MRE11P49959 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC20.03■□□□□ 0.8
MRE11P49959 KRT16P1-201ENST00000399124 1418 ntBASIC20.02■□□□□ 0.8
MRE11P49959 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MRE11P49959 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MRE11P49959 STK24-203ENST00000397517 4578 ntTSL 2 BASIC20.02■□□□□ 0.8
MRE11P49959 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.02■□□□□ 0.8
MRE11P49959 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
MRE11P49959 AC126177.1-201ENST00000547829 2218 ntBASIC20.02■□□□□ 0.8
MRE11P49959 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
MRE11P49959 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC20.02■□□□□ 0.8
MRE11P49959 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MRE11P49959 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MRE11P49959 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MRE11P49959 INGX-201ENST00000359239 846 ntBASIC20.02■□□□□ 0.8
MRE11P49959 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.02■□□□□ 0.8
MRE11P49959 AL023284.2-201ENST00000405850 579 ntBASIC20.02■□□□□ 0.8
MRE11P49959 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.02■□□□□ 0.8
MRE11P49959 MCCD1P1-208ENST00000445732 328 ntBASIC20.02■□□□□ 0.8
MRE11P49959 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
MRE11P49959 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MRE11P49959 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MRE11P49959 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.02■□□□□ 0.8
MRE11P49959 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MRE11P49959 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.02■□□□□ 0.8
MRE11P49959 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
MRE11P49959 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.02■□□□□ 0.8
MRE11P49959 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MRE11P49959 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MRE11P49959 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MRE11P49959 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MRE11P49959 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MRE11P49959 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
MRE11P49959 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
MRE11P49959 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
MRE11P49959 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.79
MRE11P49959 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
MRE11P49959 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.02■□□□□ 0.79
MRE11P49959 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
MRE11P49959 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
MRE11P49959 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.02■□□□□ 0.79
MRE11P49959 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
MRE11P49959 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC20.01■□□□□ 0.79
MRE11P49959 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
MRE11P49959 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
MRE11P49959 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC20.01■□□□□ 0.79
MRE11P49959 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.01■□□□□ 0.79
MRE11P49959 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.01■□□□□ 0.79
MRE11P49959 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.01■□□□□ 0.79
MRE11P49959 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.01■□□□□ 0.79
MRE11P49959 AP005242.2-201ENST00000580065 1175 ntBASIC20.01■□□□□ 0.79
MRE11P49959 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.01■□□□□ 0.79
MRE11P49959 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.01■□□□□ 0.79
MRE11P49959 AC117500.6-201ENST00000624871 588 ntBASIC20.01■□□□□ 0.79
MRE11P49959 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 AC092053.1-201ENST00000605787 1936 ntBASIC20.01■□□□□ 0.79
MRE11P49959 AC092364.2-201ENST00000596710 2692 ntBASIC20.01■□□□□ 0.79
MRE11P49959 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC20.01■□□□□ 0.79
MRE11P49959 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
MRE11P49959 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.01■□□□□ 0.79
MRE11P49959 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MRE11P49959 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC20.01■□□□□ 0.79
MRE11P49959 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms