Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PON3-205ENST00000451904 1053 ntTSL 3 BASIC15.14■□□□□ 0.01
SOX2P48431 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SOX2P48431 AC011558.1-201ENST00000623459 338 ntBASIC15.14■□□□□ 0.01
SOX2P48431 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.14■□□□□ 0.01
SOX2P48431 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
SOX2P48431 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SOX2P48431 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.14■□□□□ 0.01
SOX2P48431 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SOX2P48431 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SOX2P48431 AC063926.3-201ENST00000624734 5658 ntBASIC15.13■□□□□ 0.01
SOX2P48431 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.13■□□□□ 0.01
SOX2P48431 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.13■□□□□ 0.01
SOX2P48431 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
SOX2P48431 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC15.13■□□□□ 0.01
SOX2P48431 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SOX2P48431 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC15.13■□□□□ 0.01
SOX2P48431 MIR662-201ENST00000384847 95 ntBASIC15.13■□□□□ 0.01
SOX2P48431 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC15.13■□□□□ 0.01
SOX2P48431 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SOX2P48431 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC15.13■□□□□ 0.01
SOX2P48431 SNX5-210ENST00000481323 562 ntTSL 3 BASIC15.13■□□□□ 0.01
SOX2P48431 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC15.13■□□□□ 0.01
SOX2P48431 AC005332.3-201ENST00000589904 676 ntBASIC15.13■□□□□ 0.01
SOX2P48431 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.13■□□□□ 0.01
SOX2P48431 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC15.13■□□□□ 0.01
SOX2P48431 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SOX2P48431 AC145285.6-201ENST00000604632 637 ntBASIC15.13■□□□□ 0.01
SOX2P48431 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SOX2P48431 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SOX2P48431 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.13■□□□□ 0.01
SOX2P48431 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.13■□□□□ 0.01
SOX2P48431 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC15.13■□□□□ 0.01
SOX2P48431 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
SOX2P48431 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC15.13■□□□□ 0.01
SOX2P48431 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX2P48431 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.12■□□□□ 0.01
SOX2P48431 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.12■□□□□ 0.01
SOX2P48431 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC15.12■□□□□ 0.01
SOX2P48431 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.12■□□□□ 0.01
SOX2P48431 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
SOX2P48431 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.12■□□□□ 0.01
SOX2P48431 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SOX2P48431 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
SOX2P48431 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SOX2P48431 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC15.12■□□□□ 0.01
SOX2P48431 NAA38-203ENST00000575071 553 ntTSL 2 BASIC15.12■□□□□ 0.01
SOX2P48431 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 AC139887.4-201ENST00000607877 719 ntBASIC15.12■□□□□ 0.01
SOX2P48431 AC019129.2-201ENST00000609837 1235 ntBASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms