Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RFC4P35249 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.34■■□□□ 1.01
RFC4P35249 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RFC4P35249 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
RFC4P35249 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RFC4P35249 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RFC4P35249 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RFC4P35249 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.33■■□□□ 1.01
RFC4P35249 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
RFC4P35249 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC21.33■■□□□ 1.01
RFC4P35249 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RFC4P35249 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
RFC4P35249 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RFC4P35249 CALY-202ENST00000368555 783 ntTSL 2 BASIC21.33■■□□□ 1.01
RFC4P35249 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
RFC4P35249 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RFC4P35249 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
RFC4P35249 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC21.33■■□□□ 1.01
RFC4P35249 SPTLC1P1-201ENST00000447199 261 ntBASIC21.33■■□□□ 1.01
RFC4P35249 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC21.33■■□□□ 1.01
RFC4P35249 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC21.33■■□□□ 1.01
RFC4P35249 RARRES2P9-201ENST00000565168 469 ntBASIC21.33■■□□□ 1.01
RFC4P35249 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC21.33■■□□□ 1.01
RFC4P35249 AL138828.2-201ENST00000615812 383 ntBASIC21.33■■□□□ 1.01
RFC4P35249 AP001350.2-201ENST00000625104 1094 ntBASIC21.33■■□□□ 1.01
RFC4P35249 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
RFC4P35249 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC21.33■■□□□ 1
RFC4P35249 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
RFC4P35249 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RFC4P35249 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
RFC4P35249 TOP3BP1-201ENST00000420768 1380 ntBASIC21.33■■□□□ 1
RFC4P35249 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC21.33■■□□□ 1
RFC4P35249 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
RFC4P35249 AC090164.3-201ENST00000610780 2143 ntBASIC21.32■■□□□ 1
RFC4P35249 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC21.32■■□□□ 1
RFC4P35249 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC21.32■■□□□ 1
RFC4P35249 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC21.32■■□□□ 1
RFC4P35249 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC21.32■■□□□ 1
RFC4P35249 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
RFC4P35249 LY6E-204ENST00000519546 971 ntTSL 2 BASIC21.32■■□□□ 1
RFC4P35249 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC21.32■■□□□ 1
RFC4P35249 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC21.32■■□□□ 1
RFC4P35249 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
RFC4P35249 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
RFC4P35249 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC21.32■■□□□ 1
RFC4P35249 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC21.32■■□□□ 1
RFC4P35249 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC21.32■■□□□ 1
RFC4P35249 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.31■■□□□ 1
RFC4P35249 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 CU639417.3-201ENST00000624240 1404 ntBASIC21.31■■□□□ 1
RFC4P35249 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC21.31■■□□□ 1
RFC4P35249 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC21.31■■□□□ 1
RFC4P35249 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC21.31■■□□□ 1
RFC4P35249 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC21.31■■□□□ 1
RFC4P35249 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC21.31■■□□□ 1
RFC4P35249 MPI-209ENST00000564003 1195 ntTSL 2 BASIC21.31■■□□□ 1
RFC4P35249 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
RFC4P35249 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
RFC4P35249 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC21.31■■□□□ 1
RFC4P35249 AP3S2-216ENST00000617003 1561 ntBASIC21.31■■□□□ 1
RFC4P35249 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.31■■□□□ 1
RFC4P35249 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RFC4P35249 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.3■■□□□ 1
RFC4P35249 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.3■■□□□ 1
RFC4P35249 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
RFC4P35249 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC21.3■■□□□ 1
RFC4P35249 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.3■■□□□ 1
RFC4P35249 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms