Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.57■□□□□ 0.72
SMARCA1P28370 AP002490.2-201ENST00000524791 560 ntBASIC19.57■□□□□ 0.72
SMARCA1P28370 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SMARCA1P28370 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.57■□□□□ 0.72
SMARCA1P28370 KRT19P2-202ENST00000557173 1012 ntBASIC19.57■□□□□ 0.72
SMARCA1P28370 AC018845.2-201ENST00000568326 409 ntBASIC19.57■□□□□ 0.72
SMARCA1P28370 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.57■□□□□ 0.72
SMARCA1P28370 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SMARCA1P28370 AC092068.3-201ENST00000587894 2016 ntBASIC19.57■□□□□ 0.72
SMARCA1P28370 HCG11-201ENST00000411553 5696 ntBASIC19.57■□□□□ 0.72
SMARCA1P28370 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCA1P28370 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMARCA1P28370 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCA1P28370 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCA1P28370 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCA1P28370 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.56■□□□□ 0.72
SMARCA1P28370 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.56■□□□□ 0.72
SMARCA1P28370 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCA1P28370 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCA1P28370 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.56■□□□□ 0.72
SMARCA1P28370 SLC22A20-204ENST00000530038 1673 ntBASIC19.56■□□□□ 0.72
SMARCA1P28370 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCA1P28370 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCA1P28370 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SMARCA1P28370 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCA1P28370 LINC00895-201ENST00000629028 1637 ntBASIC19.56■□□□□ 0.72
SMARCA1P28370 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.56■□□□□ 0.72
SMARCA1P28370 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
SMARCA1P28370 PDPK2P-202ENST00000562415 1191 ntBASIC19.56■□□□□ 0.72
SMARCA1P28370 AL031432.2-201ENST00000566714 459 ntBASIC19.56■□□□□ 0.72
SMARCA1P28370 AL928711.1-201ENST00000570165 459 ntBASIC19.56■□□□□ 0.72
SMARCA1P28370 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.56■□□□□ 0.72
SMARCA1P28370 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCA1P28370 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.56■□□□□ 0.72
SMARCA1P28370 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.56■□□□□ 0.72
SMARCA1P28370 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCA1P28370 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCA1P28370 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
SMARCA1P28370 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.56■□□□□ 0.72
SMARCA1P28370 AC060834.1-201ENST00000443027 2032 ntBASIC19.56■□□□□ 0.72
SMARCA1P28370 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCA1P28370 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.56■□□□□ 0.72
SMARCA1P28370 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMARCA1P28370 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCA1P28370 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCA1P28370 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCA1P28370 BCAR1-209ENST00000546196 1340 ntBASIC19.55■□□□□ 0.72
SMARCA1P28370 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCA1P28370 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SMARCA1P28370 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCA1P28370 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCA1P28370 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCA1P28370 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.55■□□□□ 0.72
SMARCA1P28370 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
SMARCA1P28370 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCA1P28370 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.55■□□□□ 0.72
SMARCA1P28370 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.55■□□□□ 0.72
SMARCA1P28370 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCA1P28370 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.55■□□□□ 0.72
SMARCA1P28370 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.55■□□□□ 0.72
SMARCA1P28370 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.55■□□□□ 0.72
SMARCA1P28370 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.55■□□□□ 0.72
SMARCA1P28370 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.55■□□□□ 0.72
SMARCA1P28370 AC002347.1-201ENST00000569543 541 ntBASIC19.55■□□□□ 0.72
SMARCA1P28370 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.55■□□□□ 0.72
SMARCA1P28370 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.55■□□□□ 0.72
SMARCA1P28370 AC025580.3-201ENST00000617932 1424 ntBASIC19.55■□□□□ 0.72
SMARCA1P28370 AC131009.4-201ENST00000624048 1740 ntBASIC19.55■□□□□ 0.72
SMARCA1P28370 AC092865.6-201ENST00000642101 219 ntBASIC19.55■□□□□ 0.72
SMARCA1P28370 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCA1P28370 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCA1P28370 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCA1P28370 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMARCA1P28370 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.55■□□□□ 0.72
SMARCA1P28370 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SMARCA1P28370 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SMARCA1P28370 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.54■□□□□ 0.72
SMARCA1P28370 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SMARCA1P28370 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.54■□□□□ 0.72
SMARCA1P28370 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SMARCA1P28370 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.54■□□□□ 0.72
SMARCA1P28370 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.54■□□□□ 0.72
SMARCA1P28370 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.54■□□□□ 0.72
SMARCA1P28370 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.54■□□□□ 0.72
SMARCA1P28370 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.54■□□□□ 0.72
SMARCA1P28370 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.54■□□□□ 0.72
SMARCA1P28370 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.54■□□□□ 0.72
SMARCA1P28370 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms