Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 AC104581.1-202ENST00000635932 2618 ntBASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 AC092580.3-201ENST00000430932 139 ntBASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 MIR4453-201ENST00000584019 89 ntBASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 LINC00304-203ENST00000565008 1864 ntBASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CSB-PGBD3P0DP91 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 TNXA-203ENST00000507684 2038 ntBASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 CD81-202ENST00000381036 880 ntTSL 3 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 SSH2-211ENST00000590153 570 ntTSL 4 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 AL031055.1-201ENST00000606362 631 ntBASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CSB-PGBD3P0DP91 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 HCG4-201ENST00000418983 998 ntBASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 CRB3P1-201ENST00000449338 276 ntBASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 MTRF1LP2-201ENST00000506027 1122 ntBASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CSB-PGBD3P0DP91 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 RNU1-129P-201ENST00000384064 167 ntBASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 SERBP1P5-201ENST00000510079 1181 ntBASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 U1.21-201ENST00000580816 167 ntBASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 WT1-AS_2.1-201ENST00000613208 137 ntBASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC22.52■■□□□ 1.2
CSB-PGBD3P0DP91 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms