Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CXCL1P09341 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.28
CXCL1P09341 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CXCL1P09341 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC13.33□□□□□ -0.28
CXCL1P09341 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC13.33□□□□□ -0.28
CXCL1P09341 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC13.33□□□□□ -0.28
CXCL1P09341 PKD1P5-201ENST00000532415 10291 ntBASIC13.33□□□□□ -0.28
CXCL1P09341 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CXCL1P09341 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC13.33□□□□□ -0.28
CXCL1P09341 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
CXCL1P09341 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CXCL1P09341 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CXCL1P09341 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.33□□□□□ -0.28
CXCL1P09341 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.33□□□□□ -0.28
CXCL1P09341 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CXCL1P09341 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CXCL1P09341 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 MTHFR-217ENST00000641820 1569 ntBASIC13.32□□□□□ -0.28
CXCL1P09341 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CXCL1P09341 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
CXCL1P09341 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
CXCL1P09341 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CXCL1P09341 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
CXCL1P09341 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC13.32□□□□□ -0.28
CXCL1P09341 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC13.32□□□□□ -0.28
CXCL1P09341 AC011506.1-201ENST00000474329 610 ntBASIC13.32□□□□□ -0.28
CXCL1P09341 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC13.32□□□□□ -0.28
CXCL1P09341 RN7SL471P-201ENST00000580476 299 ntBASIC13.32□□□□□ -0.28
CXCL1P09341 AC104771.1-201ENST00000603335 964 ntBASIC13.32□□□□□ -0.28
CXCL1P09341 CR392000.1-201ENST00000624770 1228 ntBASIC13.32□□□□□ -0.28
CXCL1P09341 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CXCL1P09341 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
CXCL1P09341 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CXCL1P09341 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
CXCL1P09341 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CXCL1P09341 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CXCL1P09341 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
CXCL1P09341 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CXCL1P09341 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CXCL1P09341 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CXCL1P09341 ALOX12P2-203ENST00000570921 1945 ntBASIC13.31□□□□□ -0.28
CXCL1P09341 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CXCL1P09341 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CXCL1P09341 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC13.31□□□□□ -0.28
CXCL1P09341 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CXCL1P09341 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC13.31□□□□□ -0.28
CXCL1P09341 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 RNF121-214ENST00000533380 870 ntTSL 3 BASIC13.31□□□□□ -0.28
CXCL1P09341 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC13.31□□□□□ -0.28
CXCL1P09341 RARRES2P10-201ENST00000564312 460 ntBASIC13.31□□□□□ -0.28
CXCL1P09341 NAT14-202ENST00000587400 416 ntTSL 5 BASIC13.31□□□□□ -0.28
CXCL1P09341 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.31□□□□□ -0.28
CXCL1P09341 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CXCL1P09341 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CXCL1P09341 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.31□□□□□ -0.28
CXCL1P09341 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms