Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VIMP08670 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VIMP08670 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
VIMP08670 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.27■□□□□ 0.36
VIMP08670 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VIMP08670 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VIMP08670 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VIMP08670 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.27■□□□□ 0.36
VIMP08670 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VIMP08670 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.27■□□□□ 0.36
VIMP08670 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.27■□□□□ 0.36
VIMP08670 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VIMP08670 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
VIMP08670 AC124947.2-201ENST00000547118 1133 ntBASIC17.27■□□□□ 0.36
VIMP08670 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VIMP08670 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VIMP08670 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VIMP08670 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VIMP08670 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.27■□□□□ 0.35
VIMP08670 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VIMP08670 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.35
VIMP08670 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VIMP08670 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC17.27■□□□□ 0.35
VIMP08670 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
VIMP08670 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VIMP08670 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
VIMP08670 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
VIMP08670 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.26■□□□□ 0.35
VIMP08670 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
VIMP08670 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
VIMP08670 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
VIMP08670 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.26■□□□□ 0.35
VIMP08670 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VIMP08670 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
VIMP08670 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.26■□□□□ 0.35
VIMP08670 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.26■□□□□ 0.35
VIMP08670 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.26■□□□□ 0.35
VIMP08670 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.26■□□□□ 0.35
VIMP08670 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.26■□□□□ 0.35
VIMP08670 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.26■□□□□ 0.35
VIMP08670 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC17.26■□□□□ 0.35
VIMP08670 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.26■□□□□ 0.35
VIMP08670 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VIMP08670 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.26■□□□□ 0.35
VIMP08670 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.26■□□□□ 0.35
VIMP08670 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VIMP08670 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VIMP08670 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.26■□□□□ 0.35
VIMP08670 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
VIMP08670 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC17.26■□□□□ 0.35
VIMP08670 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 AC144831.1-201ENST00000573312 2656 ntBASIC17.25■□□□□ 0.35
VIMP08670 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VIMP08670 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
VIMP08670 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.25■□□□□ 0.35
VIMP08670 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.25■□□□□ 0.35
VIMP08670 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.25■□□□□ 0.35
VIMP08670 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.25■□□□□ 0.35
VIMP08670 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
VIMP08670 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.25■□□□□ 0.35
VIMP08670 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.25■□□□□ 0.35
VIMP08670 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.25■□□□□ 0.35
VIMP08670 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.25■□□□□ 0.35
VIMP08670 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
VIMP08670 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VIMP08670 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.25■□□□□ 0.35
VIMP08670 AL136379.1-201ENST00000623471 2642 ntBASIC17.25■□□□□ 0.35
VIMP08670 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.25■□□□□ 0.35
VIMP08670 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.25■□□□□ 0.35
VIMP08670 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
VIMP08670 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
VIMP08670 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
VIMP08670 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms