Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SIX3O95343 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.77■□□□□ 0.28
SIX3O95343 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
SIX3O95343 NUS1P1-201ENST00000446295 882 ntBASIC16.77■□□□□ 0.28
SIX3O95343 AC104819.1-201ENST00000504587 486 ntBASIC16.77■□□□□ 0.28
SIX3O95343 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.77■□□□□ 0.28
SIX3O95343 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SIX3O95343 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.77■□□□□ 0.28
SIX3O95343 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SIX3O95343 AP000867.4-201ENST00000641616 219 ntBASIC16.77■□□□□ 0.28
SIX3O95343 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
SIX3O95343 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.77■□□□□ 0.27
SIX3O95343 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
SIX3O95343 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
SIX3O95343 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
SIX3O95343 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SIX3O95343 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
SIX3O95343 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SIX3O95343 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SIX3O95343 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SIX3O95343 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
SIX3O95343 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
SIX3O95343 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.76■□□□□ 0.27
SIX3O95343 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SIX3O95343 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SIX3O95343 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
SIX3O95343 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
SIX3O95343 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SIX3O95343 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.76■□□□□ 0.27
SIX3O95343 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 AC092119.3-201ENST00000612618 583 ntBASIC16.76■□□□□ 0.27
SIX3O95343 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.76■□□□□ 0.27
SIX3O95343 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SIX3O95343 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX3O95343 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SIX3O95343 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
SIX3O95343 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX3O95343 AL603756.1-201ENST00000606511 2163 ntBASIC16.75■□□□□ 0.27
SIX3O95343 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX3O95343 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SIX3O95343 PCDH8P1-201ENST00000428983 2773 ntBASIC16.75■□□□□ 0.27
SIX3O95343 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SIX3O95343 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX3O95343 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SIX3O95343 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX3O95343 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX3O95343 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX3O95343 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX3O95343 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.75■□□□□ 0.27
SIX3O95343 SPDYE21P-201ENST00000413323 827 ntBASIC16.75■□□□□ 0.27
SIX3O95343 AL020989.1-201ENST00000422979 469 ntBASIC16.75■□□□□ 0.27
SIX3O95343 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX3O95343 KRT18P35-201ENST00000510488 1269 ntBASIC16.75■□□□□ 0.27
SIX3O95343 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.75■□□□□ 0.27
SIX3O95343 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX3O95343 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.75■□□□□ 0.27
SIX3O95343 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.75■□□□□ 0.27
SIX3O95343 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.75■□□□□ 0.27
SIX3O95343 AC092329.2-201ENST00000598402 547 ntBASIC16.75■□□□□ 0.27
SIX3O95343 AC099336.1-202ENST00000602961 463 ntBASIC16.75■□□□□ 0.27
SIX3O95343 AC069148.1-201ENST00000608741 768 ntBASIC16.75■□□□□ 0.27
SIX3O95343 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SIX3O95343 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SIX3O95343 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX3O95343 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX3O95343 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.75■□□□□ 0.27
SIX3O95343 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX3O95343 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX3O95343 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX3O95343 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX3O95343 AC004817.3-201ENST00000602957 2129 ntBASIC16.75■□□□□ 0.27
SIX3O95343 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX3O95343 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX3O95343 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms