Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 AL645728.1-201ENST00000366221 2101 ntBASIC16.71■□□□□ 0.27
HDAC3O15379 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
HDAC3O15379 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 VENTXP5-201ENST00000523979 775 ntBASIC16.71■□□□□ 0.27
HDAC3O15379 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.71■□□□□ 0.27
HDAC3O15379 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.71■□□□□ 0.27
HDAC3O15379 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.71■□□□□ 0.27
HDAC3O15379 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HDAC3O15379 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
HDAC3O15379 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
HDAC3O15379 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
HDAC3O15379 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.71■□□□□ 0.27
HDAC3O15379 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HDAC3O15379 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.26
HDAC3O15379 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
HDAC3O15379 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
HDAC3O15379 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.26
HDAC3O15379 AC092364.2-201ENST00000596710 2692 ntBASIC16.71■□□□□ 0.26
HDAC3O15379 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
HDAC3O15379 TUBB8P12-201ENST00000308911 1335 ntBASIC16.7■□□□□ 0.26
HDAC3O15379 TUBB7P-202ENST00000428444 1305 ntBASIC16.7■□□□□ 0.26
HDAC3O15379 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.7■□□□□ 0.26
HDAC3O15379 TUBB8P7-204ENST00000567960 1332 ntBASIC16.7■□□□□ 0.26
HDAC3O15379 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
HDAC3O15379 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.7■□□□□ 0.26
HDAC3O15379 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
HDAC3O15379 AL391256.1-201ENST00000443260 1855 ntBASIC16.7■□□□□ 0.26
HDAC3O15379 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
HDAC3O15379 AC009336.1-201ENST00000608941 1553 ntBASIC16.7■□□□□ 0.26
HDAC3O15379 AL353593.2-201ENST00000602529 1483 ntBASIC16.7■□□□□ 0.26
HDAC3O15379 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 FAM220CP-201ENST00000395253 831 ntBASIC16.7■□□□□ 0.26
HDAC3O15379 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
HDAC3O15379 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.7■□□□□ 0.26
HDAC3O15379 AL138831.2-201ENST00000606564 490 ntBASIC16.7■□□□□ 0.26
HDAC3O15379 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.7■□□□□ 0.26
HDAC3O15379 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 AC007950.2-201ENST00000615045 2347 ntBASIC16.7■□□□□ 0.26
HDAC3O15379 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.7■□□□□ 0.26
HDAC3O15379 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.7■□□□□ 0.26
HDAC3O15379 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.7■□□□□ 0.26
HDAC3O15379 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.7■□□□□ 0.26
HDAC3O15379 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC3O15379 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.7■□□□□ 0.26
HDAC3O15379 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
HDAC3O15379 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
HDAC3O15379 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.69■□□□□ 0.26
HDAC3O15379 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.69■□□□□ 0.26
HDAC3O15379 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
HDAC3O15379 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
HDAC3O15379 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.69■□□□□ 0.26
HDAC3O15379 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
HDAC3O15379 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.69■□□□□ 0.26
HDAC3O15379 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.69■□□□□ 0.26
HDAC3O15379 GUSBP12-201ENST00000513727 720 ntBASIC16.69■□□□□ 0.26
HDAC3O15379 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.69■□□□□ 0.26
HDAC3O15379 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HDAC3O15379 AL353801.3-201ENST00000609898 542 ntBASIC16.69■□□□□ 0.26
HDAC3O15379 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.69■□□□□ 0.26
HDAC3O15379 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.69■□□□□ 0.26
HDAC3O15379 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms