Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
NPHP1O15259 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP1O15259 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
NPHP1O15259 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP1O15259 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP1O15259 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP1O15259 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC21.55■■□□□ 1.04
NPHP1O15259 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP1O15259 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP1O15259 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP1O15259 AC018470.1-201ENST00000624790 3129 ntBASIC21.54■■□□□ 1.04
NPHP1O15259 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP1O15259 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP1O15259 CYP51A1P2-201ENST00000419457 1499 ntBASIC21.54■■□□□ 1.04
NPHP1O15259 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC21.54■■□□□ 1.04
NPHP1O15259 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
NPHP1O15259 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP1O15259 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC21.54■■□□□ 1.04
NPHP1O15259 CNN2P2-201ENST00000443536 909 ntBASIC21.54■■□□□ 1.04
NPHP1O15259 CNN2P3-201ENST00000450201 906 ntBASIC21.54■■□□□ 1.04
NPHP1O15259 INGX-202ENST00000489074 768 ntBASIC21.54■■□□□ 1.04
NPHP1O15259 SLC25A6P2-201ENST00000497974 877 ntBASIC21.54■■□□□ 1.04
NPHP1O15259 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP1O15259 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC21.54■■□□□ 1.04
NPHP1O15259 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP1O15259 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC21.54■■□□□ 1.04
NPHP1O15259 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC21.54■■□□□ 1.04
NPHP1O15259 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP1O15259 VPS29-207ENST00000549970 818 ntTSL 3 BASIC21.54■■□□□ 1.04
NPHP1O15259 AL136317.3-201ENST00000618497 906 ntBASIC21.54■■□□□ 1.04
NPHP1O15259 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP1O15259 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP1O15259 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP1O15259 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP1O15259 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
NPHP1O15259 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.54■■□□□ 1.04
NPHP1O15259 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
NPHP1O15259 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC21.54■■□□□ 1.04
NPHP1O15259 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC21.54■■□□□ 1.04
NPHP1O15259 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
NPHP1O15259 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
NPHP1O15259 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP1O15259 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.54■■□□□ 1.04
NPHP1O15259 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.53■■□□□ 1.04
NPHP1O15259 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.53■■□□□ 1.04
NPHP1O15259 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC21.53■■□□□ 1.04
NPHP1O15259 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC21.53■■□□□ 1.04
NPHP1O15259 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
NPHP1O15259 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC21.53■■□□□ 1.04
NPHP1O15259 KRT18P32-201ENST00000424695 1287 ntBASIC21.53■■□□□ 1.04
NPHP1O15259 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC21.53■■□□□ 1.04
NPHP1O15259 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC21.53■■□□□ 1.04
NPHP1O15259 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC21.53■■□□□ 1.04
NPHP1O15259 KRT8P48-201ENST00000515599 1220 ntBASIC21.53■■□□□ 1.04
NPHP1O15259 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC21.53■■□□□ 1.04
NPHP1O15259 DUX4L27-201ENST00000554796 1261 ntBASIC21.53■■□□□ 1.04
NPHP1O15259 RPL28-209ENST00000560055 670 ntTSL 3 BASIC21.53■■□□□ 1.04
NPHP1O15259 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC21.53■■□□□ 1.04
NPHP1O15259 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.53■■□□□ 1.04
NPHP1O15259 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP1O15259 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP1O15259 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
NPHP1O15259 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP1O15259 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC21.52■■□□□ 1.04
NPHP1O15259 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
NPHP1O15259 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP1O15259 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.52■■□□□ 1.04
NPHP1O15259 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP1O15259 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP1O15259 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP1O15259 ADH5P3-201ENST00000433842 1137 ntBASIC21.52■■□□□ 1.04
NPHP1O15259 RN7SL589P-201ENST00000481268 310 ntBASIC21.52■■□□□ 1.04
NPHP1O15259 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
NPHP1O15259 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC21.52■■□□□ 1.04
NPHP1O15259 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC21.52■■□□□ 1.04
NPHP1O15259 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC21.52■■□□□ 1.04
NPHP1O15259 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC21.52■■□□□ 1.04
NPHP1O15259 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP1O15259 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
NPHP1O15259 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC21.52■■□□□ 1.04
NPHP1O15259 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP1O15259 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP1O15259 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP1O15259 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC21.52■■□□□ 1.04
NPHP1O15259 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms