Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS9D1Q9Y2B5 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS9D1Q9Y2B5 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS9D1Q9Y2B5 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS9D1Q9Y2B5 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS9D1Q9Y2B5 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS9D1Q9Y2B5 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS9D1Q9Y2B5 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
VPS9D1Q9Y2B5 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 KRT18P31-201ENST00000506277 1292 ntBASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 AP002490.2-201ENST00000524791 560 ntBASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS9D1Q9Y2B5 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 NCF1C-201ENST00000438382 1427 ntBASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 TUBB8P12-201ENST00000308911 1335 ntBASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 TUBB7P-202ENST00000428444 1305 ntBASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 TUBB8P7-204ENST00000567960 1332 ntBASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 LINC00982-205ENST00000420957 435 ntBASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 AC024475.1-201ENST00000528480 605 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 AC091304.2-201ENST00000564639 760 ntBASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 AC092053.1-201ENST00000605787 1936 ntBASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 AL356309.3-201ENST00000624132 1934 ntBASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 AC022211.2-201ENST00000585075 2527 ntBASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS9D1Q9Y2B5 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 FRMD8P1-201ENST00000440433 1524 ntBASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms