Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 NUS1P2-201ENST00000417358 873 ntBASIC13.9□□□□□ -0.18
FOXA2Q9Y261 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 NUS1P1-201ENST00000446295 882 ntBASIC13.9□□□□□ -0.18
FOXA2Q9Y261 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 STK25P1-201ENST00000585406 838 ntBASIC13.9□□□□□ -0.18
FOXA2Q9Y261 BNIP3P18-201ENST00000593976 575 ntBASIC13.9□□□□□ -0.18
FOXA2Q9Y261 AC114341.1-201ENST00000618070 349 ntBASIC13.9□□□□□ -0.18
FOXA2Q9Y261 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 TP73-AS1-210ENST00000637775 1455 ntBASIC13.9□□□□□ -0.18
FOXA2Q9Y261 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
FOXA2Q9Y261 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.19
FOXA2Q9Y261 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 THAP5-204ENST00000438865 868 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 COX5A-204ENST00000567270 579 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 AC011467.2-201ENST00000598425 242 ntBASIC13.89□□□□□ -0.19
FOXA2Q9Y261 AL121772.3-201ENST00000610840 674 ntBASIC13.89□□□□□ -0.19
FOXA2Q9Y261 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA2Q9Y261 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms