Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 AL353801.3-201ENST00000609898 542 ntBASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC39Q9UFE4 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 PCED1CP-201ENST00000419887 785 ntBASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 CHCHD2P8-201ENST00000429873 447 ntBASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 AC116407.4-201ENST00000623319 1061 ntBASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC39Q9UFE4 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC39Q9UFE4 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC39Q9UFE4 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 COX5BP2-201ENST00000392354 334 ntBASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 AC005104.2-201ENST00000427818 678 ntBASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC39Q9UFE4 AC006449.5-201ENST00000610658 2098 ntBASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 AC022188.1-201ENST00000620960 1664 ntBASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms