Protein–RNA interactions for Protein: Q9NQC3

RTN4, Reticulon-4, humanhuman

Known RBP Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4Q9NQC3 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 AC010181.2-201ENST00000483759 482 ntTSL 3 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 AC130371.2-201ENST00000619443 611 ntBASIC20.34■□□□□ 0.85
RTN4Q9NQC3 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
RTN4Q9NQC3 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 AL109659.2-201ENST00000606809 1674 ntBASIC20.33■□□□□ 0.85
RTN4Q9NQC3 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 AC011298.2-201ENST00000617989 482 ntBASIC20.33■□□□□ 0.85
RTN4Q9NQC3 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RTN4Q9NQC3 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.33■□□□□ 0.84
RTN4Q9NQC3 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 PGR-210ENST00000619228 3038 ntTSL 5 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 KRT16P1-201ENST00000399124 1418 ntBASIC20.32■□□□□ 0.84
RTN4Q9NQC3 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RTN4Q9NQC3 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC20.31■□□□□ 0.84
RTN4Q9NQC3 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC20.31■□□□□ 0.84
RTN4Q9NQC3 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms