Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.69■□□□□ 0.42
USP29Q9HBJ7 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP29Q9HBJ7 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP29Q9HBJ7 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP29Q9HBJ7 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
USP29Q9HBJ7 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP29Q9HBJ7 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 AL590627.1-203ENST00000421194 1026 ntBASIC17.68■□□□□ 0.42
USP29Q9HBJ7 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 AF186996.4-201ENST00000467186 377 ntBASIC17.68■□□□□ 0.42
USP29Q9HBJ7 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 AC120114.3-201ENST00000611923 658 ntBASIC17.68■□□□□ 0.42
USP29Q9HBJ7 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.68■□□□□ 0.42
USP29Q9HBJ7 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 SPDYE21P-201ENST00000413323 827 ntBASIC17.67■□□□□ 0.42
USP29Q9HBJ7 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 PMS2P1-201ENST00000431037 1228 ntBASIC17.67■□□□□ 0.42
USP29Q9HBJ7 KRT18P67-201ENST00000432816 1264 ntBASIC17.67■□□□□ 0.42
USP29Q9HBJ7 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 AC093909.1-201ENST00000504731 1122 ntBASIC17.67■□□□□ 0.42
USP29Q9HBJ7 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 AC006538.3-201ENST00000612495 578 ntBASIC17.67■□□□□ 0.42
USP29Q9HBJ7 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 AL118508.1-201ENST00000613502 2345 ntBASIC17.67■□□□□ 0.42
USP29Q9HBJ7 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 GPR89P-201ENST00000407924 1495 ntBASIC17.67■□□□□ 0.42
USP29Q9HBJ7 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
USP29Q9HBJ7 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP29Q9HBJ7 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP29Q9HBJ7 AC078925.2-201ENST00000624013 1973 ntBASIC17.66■□□□□ 0.42
USP29Q9HBJ7 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP29Q9HBJ7 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP29Q9HBJ7 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP29Q9HBJ7 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP29Q9HBJ7 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
USP29Q9HBJ7 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.66■□□□□ 0.42
USP29Q9HBJ7 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP29Q9HBJ7 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms