Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL12A1Q99715 MYCLP2-201ENST00000449268 967 ntBASIC14.8□□□□□ -0.04
COL12A1Q99715 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
COL12A1Q99715 HLA-V-204ENST00000476601 1289 ntBASIC14.8□□□□□ -0.04
COL12A1Q99715 STK19B-204ENST00000512515 211 ntBASIC14.8□□□□□ -0.04
COL12A1Q99715 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.8□□□□□ -0.04
COL12A1Q99715 AC104989.1-201ENST00000519711 778 ntBASIC14.8□□□□□ -0.04
COL12A1Q99715 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.8□□□□□ -0.04
COL12A1Q99715 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.8□□□□□ -0.04
COL12A1Q99715 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.8□□□□□ -0.04
COL12A1Q99715 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.8□□□□□ -0.04
COL12A1Q99715 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
COL12A1Q99715 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC14.8□□□□□ -0.04
COL12A1Q99715 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL12A1Q99715 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL12A1Q99715 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL12A1Q99715 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL12A1Q99715 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL12A1Q99715 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL12A1Q99715 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.8□□□□□ -0.04
COL12A1Q99715 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
COL12A1Q99715 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL12A1Q99715 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC14.8□□□□□ -0.04
COL12A1Q99715 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL12A1Q99715 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC14.79□□□□□ -0.04
COL12A1Q99715 BTBD6P1-201ENST00000412176 1267 ntBASIC14.79□□□□□ -0.04
COL12A1Q99715 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC14.79□□□□□ -0.04
COL12A1Q99715 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.79□□□□□ -0.04
COL12A1Q99715 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.79□□□□□ -0.04
COL12A1Q99715 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.79□□□□□ -0.04
COL12A1Q99715 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.79□□□□□ -0.04
COL12A1Q99715 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC14.79□□□□□ -0.04
COL12A1Q99715 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.79□□□□□ -0.04
COL12A1Q99715 AC006538.1-201ENST00000567905 1585 ntBASIC14.79□□□□□ -0.04
COL12A1Q99715 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
COL12A1Q99715 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
COL12A1Q99715 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
COL12A1Q99715 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.79□□□□□ -0.04
COL12A1Q99715 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.79□□□□□ -0.04
COL12A1Q99715 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
COL12A1Q99715 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
COL12A1Q99715 AL844908.2-201ENST00000609461 460 ntBASIC14.79□□□□□ -0.04
COL12A1Q99715 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC14.79□□□□□ -0.04
COL12A1Q99715 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC14.79□□□□□ -0.04
COL12A1Q99715 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC14.79□□□□□ -0.04
COL12A1Q99715 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.79□□□□□ -0.04
COL12A1Q99715 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
COL12A1Q99715 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 AC253536.4-201ENST00000440539 267 ntBASIC14.79□□□□□ -0.04
COL12A1Q99715 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC14.79□□□□□ -0.04
COL12A1Q99715 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL12A1Q99715 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL12A1Q99715 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL12A1Q99715 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL12A1Q99715 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL12A1Q99715 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL12A1Q99715 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.78□□□□□ -0.04
COL12A1Q99715 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL12A1Q99715 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
COL12A1Q99715 AC106820.2-201ENST00000563775 3264 ntBASIC14.78□□□□□ -0.04
COL12A1Q99715 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
COL12A1Q99715 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL12A1Q99715 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL12A1Q99715 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL12A1Q99715 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
COL12A1Q99715 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
COL12A1Q99715 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.78□□□□□ -0.04
COL12A1Q99715 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.78□□□□□ -0.04
COL12A1Q99715 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC14.78□□□□□ -0.04
COL12A1Q99715 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.78□□□□□ -0.04
COL12A1Q99715 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.78□□□□□ -0.04
COL12A1Q99715 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC14.78□□□□□ -0.04
COL12A1Q99715 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL12A1Q99715 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL12A1Q99715 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL12A1Q99715 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC14.78□□□□□ -0.04
COL12A1Q99715 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC14.77□□□□□ -0.04
COL12A1Q99715 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL12A1Q99715 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
COL12A1Q99715 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC14.77□□□□□ -0.04
COL12A1Q99715 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC14.77□□□□□ -0.04
COL12A1Q99715 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms