Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 KRT18P35-201ENST00000510488 1269 ntBASIC19.62■□□□□ 0.73
USP28Q96RU2 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
USP28Q96RU2 MIR5100-201ENST00000579544 119 ntBASIC19.62■□□□□ 0.73
USP28Q96RU2 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.62■□□□□ 0.73
USP28Q96RU2 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.62■□□□□ 0.73
USP28Q96RU2 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.62■□□□□ 0.73
USP28Q96RU2 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
USP28Q96RU2 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.62■□□□□ 0.73
USP28Q96RU2 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
USP28Q96RU2 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
USP28Q96RU2 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.61■□□□□ 0.73
USP28Q96RU2 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.61■□□□□ 0.73
USP28Q96RU2 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
USP28Q96RU2 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
USP28Q96RU2 AC097637.2-201ENST00000624096 1997 ntBASIC19.61■□□□□ 0.73
USP28Q96RU2 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
USP28Q96RU2 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.61■□□□□ 0.73
USP28Q96RU2 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.61■□□□□ 0.73
USP28Q96RU2 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.61■□□□□ 0.73
USP28Q96RU2 ABCD1P5-201ENST00000445663 754 ntBASIC19.61■□□□□ 0.73
USP28Q96RU2 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.61■□□□□ 0.73
USP28Q96RU2 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.61■□□□□ 0.73
USP28Q96RU2 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.61■□□□□ 0.73
USP28Q96RU2 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
USP28Q96RU2 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
USP28Q96RU2 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
USP28Q96RU2 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
USP28Q96RU2 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
USP28Q96RU2 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP28Q96RU2 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.6■□□□□ 0.73
USP28Q96RU2 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.6■□□□□ 0.73
USP28Q96RU2 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
USP28Q96RU2 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.6■□□□□ 0.73
USP28Q96RU2 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.6■□□□□ 0.73
USP28Q96RU2 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
USP28Q96RU2 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
USP28Q96RU2 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.6■□□□□ 0.73
USP28Q96RU2 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.6■□□□□ 0.73
USP28Q96RU2 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.6■□□□□ 0.73
USP28Q96RU2 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
USP28Q96RU2 NUS1P2-201ENST00000417358 873 ntBASIC19.6■□□□□ 0.73
USP28Q96RU2 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 AC073592.4-201ENST00000623827 446 ntBASIC19.6■□□□□ 0.73
USP28Q96RU2 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.6■□□□□ 0.73
USP28Q96RU2 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.6■□□□□ 0.73
USP28Q96RU2 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP28Q96RU2 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.6■□□□□ 0.73
USP28Q96RU2 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.6■□□□□ 0.73
USP28Q96RU2 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
USP28Q96RU2 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.59■□□□□ 0.73
USP28Q96RU2 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 AC079776.2-201ENST00000641154 1609 ntBASIC19.59■□□□□ 0.73
USP28Q96RU2 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
USP28Q96RU2 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.59■□□□□ 0.73
USP28Q96RU2 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP28Q96RU2 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms