Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AC018445.3-201ENST00000624177 1945 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AL020989.1-201ENST00000422979 469 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AC068418.2-201ENST00000577309 3703 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 RAB17-203ENST00000409576 466 ntTSL 3 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 MIR1199-201ENST00000621445 119 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AC092865.6-201ENST00000642101 219 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ABCD1P5-201ENST00000445663 754 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC004706.3-202ENST00000621574 984 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 KRT18P28-201ENST00000453838 1332 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC135776.1-201ENST00000319817 2481 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 GMCL1P1-201ENST00000463439 1581 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 HDLBP-204ENST00000391976 4489 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AP002414.3-201ENST00000589352 1468 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC139713.2-201ENST00000641328 2723 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AL035633.1-201ENST00000406139 838 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ELK2BP-201ENST00000415014 1224 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AL390955.2-201ENST00000603032 514 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms