Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 LINC00982-205ENST00000420957 435 ntBASIC20.73■□□□□ 0.91
VPS53Q5VIR6 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 AC073648.2-201ENST00000510116 352 ntBASIC20.73■□□□□ 0.91
VPS53Q5VIR6 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 MIR7706-201ENST00000613747 67 ntBASIC20.73■□□□□ 0.91
VPS53Q5VIR6 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.72■□□□□ 0.91
VPS53Q5VIR6 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 AC026396.1-201ENST00000419388 421 ntBASIC20.72■□□□□ 0.91
VPS53Q5VIR6 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 FAM215A-202ENST00000632077 792 ntBASIC20.72■□□□□ 0.91
VPS53Q5VIR6 AC107918.4-202ENST00000641623 219 ntBASIC20.72■□□□□ 0.91
VPS53Q5VIR6 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 HLA-A-201ENST00000376802 1334 ntBASIC20.72■□□□□ 0.91
VPS53Q5VIR6 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
VPS53Q5VIR6 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 KLK8-205ENST00000593490 267 ntTSL 3 BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS53Q5VIR6 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
VPS53Q5VIR6 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
VPS53Q5VIR6 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 AF186996.4-201ENST00000467186 377 ntBASIC20.7■□□□□ 0.9
VPS53Q5VIR6 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms