Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC22.32■■□□□ 1.16
COL18A1P39060 RNA5-8SN4-201ENST00000613359 153 ntBASIC22.32■■□□□ 1.16
COL18A1P39060 RNA5-8SN5-201ENST00000619471 153 ntBASIC22.32■■□□□ 1.16
COL18A1P39060 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
COL18A1P39060 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL18A1P39060 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL18A1P39060 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL18A1P39060 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL18A1P39060 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
COL18A1P39060 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL18A1P39060 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL18A1P39060 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL18A1P39060 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC22.31■■□□□ 1.16
COL18A1P39060 HLA-H-201ENST00000383620 1096 ntBASIC22.31■■□□□ 1.16
COL18A1P39060 SLC25A6P5-201ENST00000435663 894 ntBASIC22.31■■□□□ 1.16
COL18A1P39060 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
COL18A1P39060 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC22.31■■□□□ 1.16
COL18A1P39060 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL18A1P39060 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL18A1P39060 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL18A1P39060 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC22.31■■□□□ 1.16
COL18A1P39060 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL18A1P39060 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC22.31■■□□□ 1.16
COL18A1P39060 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL18A1P39060 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL18A1P39060 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL18A1P39060 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL18A1P39060 PGF-202ENST00000405431 666 ntTSL 5 BASIC22.3■■□□□ 1.16
COL18A1P39060 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
COL18A1P39060 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC22.3■■□□□ 1.16
COL18A1P39060 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC22.3■■□□□ 1.16
COL18A1P39060 AC004233.3-201ENST00000607794 1269 ntBASIC22.3■■□□□ 1.16
COL18A1P39060 AC021097.1-201ENST00000607902 574 ntBASIC22.3■■□□□ 1.16
COL18A1P39060 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC22.3■■□□□ 1.16
COL18A1P39060 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL18A1P39060 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL18A1P39060 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL18A1P39060 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL18A1P39060 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC22.3■■□□□ 1.16
COL18A1P39060 AC093525.9-201ENST00000624961 1746 ntBASIC22.3■■□□□ 1.16
COL18A1P39060 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC22.3■■□□□ 1.16
COL18A1P39060 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL18A1P39060 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC22.3■■□□□ 1.16
COL18A1P39060 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
COL18A1P39060 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL18A1P39060 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL18A1P39060 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL18A1P39060 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC22.3■■□□□ 1.16
COL18A1P39060 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
COL18A1P39060 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC22.3■■□□□ 1.16
COL18A1P39060 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC22.3■■□□□ 1.16
COL18A1P39060 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC22.3■■□□□ 1.16
COL18A1P39060 AL008721.1-201ENST00000609964 604 ntBASIC22.3■■□□□ 1.16
COL18A1P39060 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL18A1P39060 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC22.3■■□□□ 1.16
COL18A1P39060 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL18A1P39060 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL18A1P39060 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC22.29■■□□□ 1.16
COL18A1P39060 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC22.29■■□□□ 1.16
COL18A1P39060 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC22.29■■□□□ 1.16
COL18A1P39060 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC22.29■■□□□ 1.16
COL18A1P39060 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC22.29■■□□□ 1.16
COL18A1P39060 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC22.29■■□□□ 1.16
COL18A1P39060 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL18A1P39060 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL18A1P39060 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC22.29■■□□□ 1.16
COL18A1P39060 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC22.29■■□□□ 1.16
COL18A1P39060 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC22.29■■□□□ 1.16
COL18A1P39060 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL18A1P39060 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL18A1P39060 STOM-203ENST00000538954 1257 ntTSL 5 BASIC22.29■■□□□ 1.16
COL18A1P39060 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC22.29■■□□□ 1.16
COL18A1P39060 MPDU1-223ENST00000582151 728 ntBASIC22.29■■□□□ 1.16
COL18A1P39060 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL18A1P39060 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC22.29■■□□□ 1.16
COL18A1P39060 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC22.29■■□□□ 1.16
COL18A1P39060 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL18A1P39060 MIR6752-201ENST00000618442 71 ntBASIC22.29■■□□□ 1.16
COL18A1P39060 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC22.29■■□□□ 1.16
COL18A1P39060 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC22.29■■□□□ 1.16
COL18A1P39060 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
COL18A1P39060 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC22.29■■□□□ 1.16
COL18A1P39060 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL18A1P39060 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL18A1P39060 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL18A1P39060 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
COL18A1P39060 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC22.28■■□□□ 1.16
COL18A1P39060 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL18A1P39060 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
COL18A1P39060 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC22.28■■□□□ 1.16
COL18A1P39060 RPL37AP1-201ENST00000412502 279 ntBASIC22.28■■□□□ 1.16
COL18A1P39060 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC22.28■■□□□ 1.16
COL18A1P39060 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL18A1P39060 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC22.28■■□□□ 1.16
COL18A1P39060 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC22.28■■□□□ 1.16
COL18A1P39060 TP53TG3HP-202ENST00000569755 579 ntBASIC22.28■■□□□ 1.16
COL18A1P39060 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
COL18A1P39060 RAB34-223ENST00000636154 730 ntTSL 2 BASIC22.28■■□□□ 1.16
COL18A1P39060 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL18A1P39060 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms