Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.42■□□□□ 0.22
MSX2P35548 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
MSX2P35548 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
MSX2P35548 TSPY14P-201ENST00000303979 915 ntBASIC16.42■□□□□ 0.22
MSX2P35548 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 TSPY12P-201ENST00000421279 868 ntBASIC16.42■□□□□ 0.22
MSX2P35548 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.42■□□□□ 0.22
MSX2P35548 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.42■□□□□ 0.22
MSX2P35548 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 Z99916.2-201ENST00000604037 246 ntBASIC16.42■□□□□ 0.22
MSX2P35548 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.42■□□□□ 0.22
MSX2P35548 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
MSX2P35548 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.42■□□□□ 0.22
MSX2P35548 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
MSX2P35548 HLA-A-202ENST00000376806 1854 ntBASIC16.42■□□□□ 0.22
MSX2P35548 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
MSX2P35548 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.41■□□□□ 0.22
MSX2P35548 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
MSX2P35548 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.41■□□□□ 0.22
MSX2P35548 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.41■□□□□ 0.22
MSX2P35548 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.41■□□□□ 0.22
MSX2P35548 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.41■□□□□ 0.22
MSX2P35548 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.41■□□□□ 0.22
MSX2P35548 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
MSX2P35548 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.41■□□□□ 0.22
MSX2P35548 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.41■□□□□ 0.22
MSX2P35548 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.41■□□□□ 0.22
MSX2P35548 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSX2P35548 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.4■□□□□ 0.22
MSX2P35548 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MSX2P35548 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
MSX2P35548 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.4■□□□□ 0.22
MSX2P35548 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.4■□□□□ 0.22
MSX2P35548 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
MSX2P35548 PRORSD1P-201ENST00000295112 541 ntBASIC16.4■□□□□ 0.22
MSX2P35548 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 AC098590.1-201ENST00000468126 897 ntBASIC16.4■□□□□ 0.22
MSX2P35548 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.4■□□□□ 0.22
MSX2P35548 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.4■□□□□ 0.22
MSX2P35548 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.4■□□□□ 0.22
MSX2P35548 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
MSX2P35548 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.4■□□□□ 0.22
MSX2P35548 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.4■□□□□ 0.22
MSX2P35548 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
MSX2P35548 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.4■□□□□ 0.22
MSX2P35548 ITM2C-210ENST00000620962 501 ntBASIC16.4■□□□□ 0.22
MSX2P35548 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.4■□□□□ 0.22
MSX2P35548 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
MSX2P35548 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.4■□□□□ 0.22
MSX2P35548 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.4■□□□□ 0.22
MSX2P35548 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MSX2P35548 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
MSX2P35548 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.4■□□□□ 0.22
MSX2P35548 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.4■□□□□ 0.22
MSX2P35548 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms