Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL5A3P25940 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC21.31■■□□□ 1
COL5A3P25940 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL5A3P25940 AC104581.1-202ENST00000635932 2618 ntBASIC21.31■■□□□ 1
COL5A3P25940 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC21.31■■□□□ 1
COL5A3P25940 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC21.31■■□□□ 1
COL5A3P25940 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC21.31■■□□□ 1
COL5A3P25940 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL5A3P25940 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC21.31■■□□□ 1
COL5A3P25940 AC093525.9-201ENST00000624961 1746 ntBASIC21.31■■□□□ 1
COL5A3P25940 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
COL5A3P25940 AC079776.1-201ENST00000401540 1152 ntBASIC21.31■■□□□ 1
COL5A3P25940 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC21.31■■□□□ 1
COL5A3P25940 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
COL5A3P25940 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC21.31■■□□□ 1
COL5A3P25940 AC003101.2-201ENST00000612557 442 ntBASIC21.31■■□□□ 1
COL5A3P25940 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL5A3P25940 RAB34-223ENST00000636154 730 ntTSL 2 BASIC21.31■■□□□ 1
COL5A3P25940 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
COL5A3P25940 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL5A3P25940 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL5A3P25940 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL5A3P25940 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL5A3P25940 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL5A3P25940 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.3■■□□□ 1
COL5A3P25940 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC21.3■■□□□ 1
COL5A3P25940 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC21.3■■□□□ 1
COL5A3P25940 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC21.3■■□□□ 1
COL5A3P25940 AC104794.3-201ENST00000566840 1248 ntBASIC21.3■■□□□ 1
COL5A3P25940 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC21.3■■□□□ 1
COL5A3P25940 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC21.3■■□□□ 1
COL5A3P25940 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC21.3■■□□□ 1
COL5A3P25940 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
COL5A3P25940 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC21.3■■□□□ 1
COL5A3P25940 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 STX3-203ENST00000529177 1571 ntTSL 2 BASIC21.3■■□□□ 1
COL5A3P25940 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.3■■□□□ 1
COL5A3P25940 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.3■■□□□ 1
COL5A3P25940 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
COL5A3P25940 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.3■■□□□ 1
COL5A3P25940 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC21.3■■□□□ 1
COL5A3P25940 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL5A3P25940 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL5A3P25940 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC21.29■■□□□ 1
COL5A3P25940 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL5A3P25940 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL5A3P25940 IGHV3-71-201ENST00000523324 359 ntBASIC21.29■■□□□ 1
COL5A3P25940 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC21.29■■□□□ 1
COL5A3P25940 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC21.29■■□□□ 1
COL5A3P25940 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC21.29■■□□□ 1
COL5A3P25940 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
COL5A3P25940 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.29■■□□□ 1
COL5A3P25940 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC21.29■■□□□ 1
COL5A3P25940 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
COL5A3P25940 KRT18P34-201ENST00000488218 1270 ntBASIC21.29■■□□□ 1
COL5A3P25940 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC21.29■■□□□ 1
COL5A3P25940 MIR6752-201ENST00000618442 71 ntBASIC21.29■■□□□ 1
COL5A3P25940 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC21.29■■□□□ 1
COL5A3P25940 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.29■■□□□ 1
COL5A3P25940 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL5A3P25940 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.28■■□□□ 1
COL5A3P25940 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL5A3P25940 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL5A3P25940 CETN4P-206ENST00000642099 2168 ntBASIC21.28■■□□□ 1
COL5A3P25940 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
COL5A3P25940 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
COL5A3P25940 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC21.28■■□□□ 1
COL5A3P25940 SLC25A6P5-201ENST00000435663 894 ntBASIC21.28■■□□□ 1
COL5A3P25940 ATP5G2P4-201ENST00000442175 420 ntBASIC21.28■■□□□ 1
COL5A3P25940 SERF2-217ENST00000630046 862 ntTSL 5 BASIC21.28■■□□□ 1
COL5A3P25940 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
COL5A3P25940 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL5A3P25940 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
COL5A3P25940 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL5A3P25940 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC21.28■■□□□ 1
COL5A3P25940 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL5A3P25940 AC073439.1-201ENST00000624121 1774 ntBASIC21.27■■□□□ 1
COL5A3P25940 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL5A3P25940 AL021920.2-201ENST00000624828 1351 ntBASIC21.27■■□□□ 1
COL5A3P25940 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL5A3P25940 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL5A3P25940 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
COL5A3P25940 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC21.27■■□□□ 1
COL5A3P25940 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC21.27■■□□□ 1
COL5A3P25940 AL353705.2-201ENST00000428243 662 ntBASIC21.27■■□□□ 1
COL5A3P25940 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC21.27■■□□□ 1
COL5A3P25940 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC21.27■■□□□ 1
COL5A3P25940 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms