Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.52■□□□□ 0.4
COL9A1P20849 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL9A1P20849 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
COL9A1P20849 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL9A1P20849 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL9A1P20849 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL9A1P20849 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
COL9A1P20849 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL9A1P20849 MYCLP1-201ENST00000372451 1075 ntBASIC17.52■□□□□ 0.4
COL9A1P20849 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
COL9A1P20849 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL9A1P20849 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
COL9A1P20849 BRWD1P1-201ENST00000401091 371 ntBASIC17.52■□□□□ 0.4
COL9A1P20849 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.52■□□□□ 0.4
COL9A1P20849 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
COL9A1P20849 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.52■□□□□ 0.4
COL9A1P20849 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
COL9A1P20849 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC17.52■□□□□ 0.4
COL9A1P20849 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL9A1P20849 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL9A1P20849 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
COL9A1P20849 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL9A1P20849 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.52■□□□□ 0.4
COL9A1P20849 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL9A1P20849 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.52■□□□□ 0.4
COL9A1P20849 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.52■□□□□ 0.4
COL9A1P20849 AC073592.8-201ENST00000624126 511 ntBASIC17.52■□□□□ 0.4
COL9A1P20849 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL9A1P20849 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
COL9A1P20849 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.52■□□□□ 0.4
COL9A1P20849 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL9A1P20849 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL9A1P20849 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
COL9A1P20849 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.51■□□□□ 0.39
COL9A1P20849 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.51■□□□□ 0.39
COL9A1P20849 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC17.51■□□□□ 0.39
COL9A1P20849 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
COL9A1P20849 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
COL9A1P20849 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC17.51■□□□□ 0.39
COL9A1P20849 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.51■□□□□ 0.39
COL9A1P20849 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC17.51■□□□□ 0.39
COL9A1P20849 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.51■□□□□ 0.39
COL9A1P20849 IGHV3-62-201ENST00000520057 340 ntBASIC17.51■□□□□ 0.39
COL9A1P20849 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.51■□□□□ 0.39
COL9A1P20849 SNX29P1-201ENST00000548357 1007 ntBASIC17.51■□□□□ 0.39
COL9A1P20849 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
COL9A1P20849 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
COL9A1P20849 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
COL9A1P20849 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.51■□□□□ 0.39
COL9A1P20849 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.51■□□□□ 0.39
COL9A1P20849 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.51■□□□□ 0.39
COL9A1P20849 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
COL9A1P20849 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.51■□□□□ 0.39
COL9A1P20849 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.51■□□□□ 0.39
COL9A1P20849 UXT-AS1-201ENST00000590504 1525 ntBASIC17.51■□□□□ 0.39
COL9A1P20849 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.51■□□□□ 0.39
COL9A1P20849 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL9A1P20849 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
COL9A1P20849 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
COL9A1P20849 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.5■□□□□ 0.39
COL9A1P20849 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
COL9A1P20849 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
COL9A1P20849 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.5■□□□□ 0.39
COL9A1P20849 APOBEC3H-202ENST00000401756 1023 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
COL9A1P20849 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.5■□□□□ 0.39
COL9A1P20849 TTTY23B-201ENST00000442790 549 ntBASIC17.5■□□□□ 0.39
COL9A1P20849 AL513480.1-201ENST00000451731 511 ntBASIC17.5■□□□□ 0.39
COL9A1P20849 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
COL9A1P20849 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
COL9A1P20849 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 AC079328.1-201ENST00000560358 952 ntBASIC17.5■□□□□ 0.39
COL9A1P20849 AL135744.1-201ENST00000565098 629 ntBASIC17.5■□□□□ 0.39
COL9A1P20849 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.5■□□□□ 0.39
COL9A1P20849 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.5■□□□□ 0.39
COL9A1P20849 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 KRT18P55-202ENST00000578578 1546 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms