Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 AC139887.3-201ENST00000568585 713 ntBASIC19.83■□□□□ 0.77
CTDNEP1O95476 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CTDNEP1O95476 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CTDNEP1O95476 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 AL691432.3-201ENST00000621860 400 ntBASIC19.83■□□□□ 0.77
CTDNEP1O95476 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.83■□□□□ 0.77
CTDNEP1O95476 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.83■□□□□ 0.76
CTDNEP1O95476 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
CTDNEP1O95476 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
CTDNEP1O95476 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.83■□□□□ 0.76
CTDNEP1O95476 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CTDNEP1O95476 PCDHB19P-201ENST00000570871 2371 ntBASIC19.83■□□□□ 0.76
CTDNEP1O95476 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CTDNEP1O95476 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 PTCHD3P3-201ENST00000403073 906 ntBASIC19.82■□□□□ 0.76
CTDNEP1O95476 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 ELK2BP-201ENST00000415014 1224 ntBASIC19.82■□□□□ 0.76
CTDNEP1O95476 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 HNRNPDP1-201ENST00000439535 754 ntBASIC19.82■□□□□ 0.76
CTDNEP1O95476 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.82■□□□□ 0.76
CTDNEP1O95476 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTDNEP1O95476 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDNEP1O95476 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDNEP1O95476 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDNEP1O95476 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CTDNEP1O95476 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDNEP1O95476 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 SCARNA2-201ENST00000458748 420 ntBASIC19.81■□□□□ 0.76
CTDNEP1O95476 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.81■□□□□ 0.76
CTDNEP1O95476 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 AC107918.4-202ENST00000641623 219 ntBASIC19.81■□□□□ 0.76
CTDNEP1O95476 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDNEP1O95476 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CTDNEP1O95476 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDNEP1O95476 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.81■□□□□ 0.76
CTDNEP1O95476 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTDNEP1O95476 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.8■□□□□ 0.76
CTDNEP1O95476 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CTDNEP1O95476 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.8■□□□□ 0.76
CTDNEP1O95476 TUBB8P12-201ENST00000308911 1335 ntBASIC19.8■□□□□ 0.76
CTDNEP1O95476 TUBB7P-202ENST00000428444 1305 ntBASIC19.8■□□□□ 0.76
CTDNEP1O95476 TUBB8P7-204ENST00000567960 1332 ntBASIC19.8■□□□□ 0.76
CTDNEP1O95476 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CTDNEP1O95476 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDNEP1O95476 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDNEP1O95476 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDNEP1O95476 AC073621.1-201ENST00000392730 636 ntBASIC19.8■□□□□ 0.76
CTDNEP1O95476 KRT18P27-201ENST00000427733 1299 ntBASIC19.8■□□□□ 0.76
CTDNEP1O95476 RPS2P1-201ENST00000434010 821 ntBASIC19.8■□□□□ 0.76
CTDNEP1O95476 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.8■□□□□ 0.76
CTDNEP1O95476 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CTDNEP1O95476 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms