Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
VPS4BO75351 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
VPS4BO75351 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS4BO75351 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VPS4BO75351 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VPS4BO75351 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS4BO75351 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.87■□□□□ 0.29
VPS4BO75351 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.87■□□□□ 0.29
VPS4BO75351 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.87■□□□□ 0.29
VPS4BO75351 RNF126P1-202ENST00000569893 925 ntBASIC16.87■□□□□ 0.29
VPS4BO75351 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 AL671883.3-201ENST00000603274 991 ntBASIC16.87■□□□□ 0.29
VPS4BO75351 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS4BO75351 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.87■□□□□ 0.29
VPS4BO75351 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.87■□□□□ 0.29
VPS4BO75351 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS4BO75351 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
VPS4BO75351 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
VPS4BO75351 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
VPS4BO75351 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
VPS4BO75351 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VPS4BO75351 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
VPS4BO75351 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
VPS4BO75351 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 MIR574-201ENST00000385209 96 ntBASIC16.86■□□□□ 0.29
VPS4BO75351 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS4BO75351 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.86■□□□□ 0.29
VPS4BO75351 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.86■□□□□ 0.29
VPS4BO75351 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS4BO75351 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.86■□□□□ 0.29
VPS4BO75351 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS4BO75351 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
VPS4BO75351 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4BO75351 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS4BO75351 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS4BO75351 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
VPS4BO75351 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
VPS4BO75351 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS4BO75351 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS4BO75351 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS4BO75351 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
VPS4BO75351 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 SLC25A1P3-201ENST00000395415 828 ntBASIC16.85■□□□□ 0.29
VPS4BO75351 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.85■□□□□ 0.29
VPS4BO75351 SAPCD2P3-201ENST00000455031 850 ntBASIC16.85■□□□□ 0.29
VPS4BO75351 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS4BO75351 AC124947.2-201ENST00000547118 1133 ntBASIC16.85■□□□□ 0.29
VPS4BO75351 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS4BO75351 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.85■□□□□ 0.29
VPS4BO75351 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
VPS4BO75351 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS4BO75351 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS4BO75351 TNRC18P3-201ENST00000441896 2691 ntBASIC16.85■□□□□ 0.29
VPS4BO75351 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
VPS4BO75351 AC005915.1-201ENST00000624912 2018 ntBASIC16.85■□□□□ 0.29
VPS4BO75351 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS4BO75351 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS4BO75351 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
VPS4BO75351 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4BO75351 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms