Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.58■□□□□ 0.57
RNF40O75150 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RNF40O75150 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
RNF40O75150 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
RNF40O75150 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.58■□□□□ 0.57
RNF40O75150 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.58■□□□□ 0.57
RNF40O75150 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.58■□□□□ 0.57
RNF40O75150 AC133963.1-201ENST00000504166 1679 ntBASIC18.58■□□□□ 0.57
RNF40O75150 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RNF40O75150 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.58■□□□□ 0.56
RNF40O75150 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RNF40O75150 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.58■□□□□ 0.56
RNF40O75150 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.58■□□□□ 0.56
RNF40O75150 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
RNF40O75150 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
RNF40O75150 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.58■□□□□ 0.56
RNF40O75150 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RNF40O75150 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RNF40O75150 AC096582.2-201ENST00000510860 516 ntBASIC18.58■□□□□ 0.56
RNF40O75150 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.58■□□□□ 0.56
RNF40O75150 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
RNF40O75150 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.58■□□□□ 0.56
RNF40O75150 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.58■□□□□ 0.56
RNF40O75150 AF228730.7-201ENST00000641842 219 ntBASIC18.58■□□□□ 0.56
RNF40O75150 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
RNF40O75150 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RNF40O75150 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
RNF40O75150 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
RNF40O75150 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.58■□□□□ 0.56
RNF40O75150 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
RNF40O75150 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.58■□□□□ 0.56
RNF40O75150 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RNF40O75150 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
RNF40O75150 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.57■□□□□ 0.56
RNF40O75150 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.57■□□□□ 0.56
RNF40O75150 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 IL9RP2-201ENST00000423948 1312 ntBASIC18.57■□□□□ 0.56
RNF40O75150 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.57■□□□□ 0.56
RNF40O75150 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
RNF40O75150 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
RNF40O75150 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.57■□□□□ 0.56
RNF40O75150 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
RNF40O75150 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
RNF40O75150 RNA5SP419-201ENST00000515908 135 ntBASIC18.57■□□□□ 0.56
RNF40O75150 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.57■□□□□ 0.56
RNF40O75150 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.57■□□□□ 0.56
RNF40O75150 MIR5100-201ENST00000579544 119 ntBASIC18.57■□□□□ 0.56
RNF40O75150 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.57■□□□□ 0.56
RNF40O75150 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.57■□□□□ 0.56
RNF40O75150 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.57■□□□□ 0.56
RNF40O75150 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.57■□□□□ 0.56
RNF40O75150 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.57■□□□□ 0.56
RNF40O75150 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
RNF40O75150 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.57■□□□□ 0.56
RNF40O75150 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.57■□□□□ 0.56
RNF40O75150 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.57■□□□□ 0.56
RNF40O75150 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF40O75150 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF40O75150 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.56■□□□□ 0.56
RNF40O75150 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
RNF40O75150 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RNF40O75150 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
RNF40O75150 LINC00554-201ENST00000564841 3011 ntBASIC18.56■□□□□ 0.56
RNF40O75150 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF40O75150 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF40O75150 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF40O75150 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF40O75150 AP000593.1-201ENST00000393668 712 ntBASIC18.56■□□□□ 0.56
RNF40O75150 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
RNF40O75150 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.56■□□□□ 0.56
RNF40O75150 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.56■□□□□ 0.56
RNF40O75150 KRT18P41-201ENST00000518924 1277 ntBASIC18.56■□□□□ 0.56
RNF40O75150 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.56■□□□□ 0.56
RNF40O75150 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.56■□□□□ 0.56
RNF40O75150 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms