Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.16■□□□□ 0.18
LDB3O75112 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
LDB3O75112 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.16■□□□□ 0.18
LDB3O75112 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
LDB3O75112 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.16■□□□□ 0.18
LDB3O75112 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
LDB3O75112 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.16■□□□□ 0.18
LDB3O75112 RNA5SP419-201ENST00000515908 135 ntBASIC16.16■□□□□ 0.18
LDB3O75112 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.16■□□□□ 0.18
LDB3O75112 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
LDB3O75112 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
LDB3O75112 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
LDB3O75112 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.15■□□□□ 0.18
LDB3O75112 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.15■□□□□ 0.18
LDB3O75112 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
LDB3O75112 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LDB3O75112 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.15■□□□□ 0.18
LDB3O75112 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
LDB3O75112 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 AC073621.1-201ENST00000392730 636 ntBASIC16.15■□□□□ 0.18
LDB3O75112 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.15■□□□□ 0.18
LDB3O75112 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.15■□□□□ 0.18
LDB3O75112 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.15■□□□□ 0.18
LDB3O75112 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.15■□□□□ 0.18
LDB3O75112 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 FDX1P1-201ENST00000449115 551 ntBASIC16.15■□□□□ 0.18
LDB3O75112 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.15■□□□□ 0.18
LDB3O75112 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.15■□□□□ 0.18
LDB3O75112 AC092910.1-201ENST00000482027 1129 ntBASIC16.15■□□□□ 0.18
LDB3O75112 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 AC079776.4-201ENST00000511039 504 ntBASIC16.15■□□□□ 0.18
LDB3O75112 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
LDB3O75112 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
LDB3O75112 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.15■□□□□ 0.18
LDB3O75112 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.15■□□□□ 0.18
LDB3O75112 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.15■□□□□ 0.18
LDB3O75112 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.15■□□□□ 0.18
LDB3O75112 AC105339.3-201ENST00000560043 636 ntBASIC16.15■□□□□ 0.18
LDB3O75112 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.15■□□□□ 0.18
LDB3O75112 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.15■□□□□ 0.18
LDB3O75112 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.15■□□□□ 0.18
LDB3O75112 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
LDB3O75112 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
LDB3O75112 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.15■□□□□ 0.18
LDB3O75112 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDB3O75112 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.15■□□□□ 0.18
LDB3O75112 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.14■□□□□ 0.18
LDB3O75112 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
LDB3O75112 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDB3O75112 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDB3O75112 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDB3O75112 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.14■□□□□ 0.17
LDB3O75112 KRT18P27-201ENST00000427733 1299 ntBASIC16.14■□□□□ 0.17
LDB3O75112 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDB3O75112 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LDB3O75112 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.14■□□□□ 0.17
LDB3O75112 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.14■□□□□ 0.17
LDB3O75112 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
LDB3O75112 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LDB3O75112 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.14■□□□□ 0.17
LDB3O75112 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.14■□□□□ 0.17
LDB3O75112 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.14■□□□□ 0.17
LDB3O75112 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.14■□□□□ 0.17
LDB3O75112 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
LDB3O75112 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 GPR89P-201ENST00000407924 1495 ntBASIC16.14■□□□□ 0.17
LDB3O75112 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDB3O75112 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDB3O75112 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms