Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.75■□□□□ 0.27
SDC3O75056 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDC3O75056 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SDC3O75056 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
SDC3O75056 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
SDC3O75056 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SDC3O75056 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.74■□□□□ 0.27
SDC3O75056 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
SDC3O75056 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 LYSMD4-203ENST00000378904 2122 ntBASIC16.74■□□□□ 0.27
SDC3O75056 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.74■□□□□ 0.27
SDC3O75056 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.74■□□□□ 0.27
SDC3O75056 FAM8A3P-201ENST00000427218 844 ntBASIC16.74■□□□□ 0.27
SDC3O75056 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SDC3O75056 AC023141.5-201ENST00000458585 616 ntBASIC16.74■□□□□ 0.27
SDC3O75056 AC109322.1-201ENST00000524499 1264 ntBASIC16.74■□□□□ 0.27
SDC3O75056 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.74■□□□□ 0.27
SDC3O75056 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 LINC01451-201ENST00000623792 534 ntBASIC16.74■□□□□ 0.27
SDC3O75056 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.74■□□□□ 0.27
SDC3O75056 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
SDC3O75056 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.74■□□□□ 0.27
SDC3O75056 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.74■□□□□ 0.27
SDC3O75056 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.74■□□□□ 0.27
SDC3O75056 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.74■□□□□ 0.27
SDC3O75056 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.74■□□□□ 0.27
SDC3O75056 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.74■□□□□ 0.27
SDC3O75056 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
SDC3O75056 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.74■□□□□ 0.27
SDC3O75056 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SDC3O75056 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SDC3O75056 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SDC3O75056 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.73■□□□□ 0.27
SDC3O75056 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 AC129492.6-201ENST00000611383 1305 ntBASIC16.73■□□□□ 0.27
SDC3O75056 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.73■□□□□ 0.27
SDC3O75056 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SDC3O75056 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.73■□□□□ 0.27
SDC3O75056 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.73■□□□□ 0.27
SDC3O75056 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
SDC3O75056 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.73■□□□□ 0.27
SDC3O75056 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.73■□□□□ 0.27
SDC3O75056 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.73■□□□□ 0.27
SDC3O75056 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.73■□□□□ 0.27
SDC3O75056 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.73■□□□□ 0.27
SDC3O75056 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.73■□□□□ 0.27
SDC3O75056 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.73■□□□□ 0.27
SDC3O75056 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.73■□□□□ 0.27
SDC3O75056 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SDC3O75056 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
SDC3O75056 LINC00304-203ENST00000565008 1864 ntBASIC16.73■□□□□ 0.27
SDC3O75056 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SDC3O75056 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.73■□□□□ 0.27
SDC3O75056 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.73■□□□□ 0.27
SDC3O75056 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 PKD1P1-201ENST00000458669 6805 ntBASIC16.72■□□□□ 0.27
SDC3O75056 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SDC3O75056 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
SDC3O75056 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 BICD1-207ENST00000551848 1962 ntBASIC16.72■□□□□ 0.27
SDC3O75056 AL121761.2-201ENST00000598007 1648 ntBASIC16.72■□□□□ 0.27
SDC3O75056 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 AC002056.1-201ENST00000395613 760 ntBASIC16.72■□□□□ 0.27
SDC3O75056 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.72■□□□□ 0.27
SDC3O75056 ADH5P3-201ENST00000433842 1137 ntBASIC16.72■□□□□ 0.27
SDC3O75056 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.72■□□□□ 0.27
SDC3O75056 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.72■□□□□ 0.27
SDC3O75056 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms