Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL139400.1-201ENST00000366220 510 ntBASIC17.39■□□□□ 0.37
HOXC11O43248 HMGA1P7-201ENST00000406908 502 ntBASIC17.39■□□□□ 0.37
HOXC11O43248 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.39■□□□□ 0.37
HOXC11O43248 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.39■□□□□ 0.37
HOXC11O43248 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
HOXC11O43248 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.39■□□□□ 0.37
HOXC11O43248 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.39■□□□□ 0.37
HOXC11O43248 AC026120.1-201ENST00000611536 926 ntBASIC17.39■□□□□ 0.37
HOXC11O43248 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC11O43248 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.39■□□□□ 0.37
HOXC11O43248 AL138688.1-201ENST00000624851 1594 ntBASIC17.39■□□□□ 0.37
HOXC11O43248 AC139713.2-201ENST00000641328 2723 ntBASIC17.39■□□□□ 0.37
HOXC11O43248 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
HOXC11O43248 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.38■□□□□ 0.37
HOXC11O43248 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.38■□□□□ 0.37
HOXC11O43248 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
HOXC11O43248 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 AL353732.1-201ENST00000569618 1459 ntBASIC17.38■□□□□ 0.37
HOXC11O43248 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HOXC11O43248 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.38■□□□□ 0.37
HOXC11O43248 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.38■□□□□ 0.37
HOXC11O43248 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.38■□□□□ 0.37
HOXC11O43248 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.38■□□□□ 0.37
HOXC11O43248 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.38■□□□□ 0.37
HOXC11O43248 AL671277.1-201ENST00000429656 993 ntBASIC17.38■□□□□ 0.37
HOXC11O43248 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.38■□□□□ 0.37
HOXC11O43248 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.38■□□□□ 0.37
HOXC11O43248 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
HOXC11O43248 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.38■□□□□ 0.37
HOXC11O43248 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.38■□□□□ 0.37
HOXC11O43248 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
HOXC11O43248 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.38■□□□□ 0.37
HOXC11O43248 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HOXC11O43248 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.38■□□□□ 0.37
HOXC11O43248 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
HOXC11O43248 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.38■□□□□ 0.37
HOXC11O43248 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXC11O43248 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.37■□□□□ 0.37
HOXC11O43248 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HOXC11O43248 AC012569.1-201ENST00000591191 1524 ntBASIC17.37■□□□□ 0.37
HOXC11O43248 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.37■□□□□ 0.37
HOXC11O43248 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.37■□□□□ 0.37
HOXC11O43248 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.37■□□□□ 0.37
HOXC11O43248 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
HOXC11O43248 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.37■□□□□ 0.37
HOXC11O43248 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.37■□□□□ 0.37
HOXC11O43248 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.37■□□□□ 0.37
HOXC11O43248 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.37■□□□□ 0.37
HOXC11O43248 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HOXC11O43248 TIMM8BP1-201ENST00000452384 211 ntBASIC17.37■□□□□ 0.37
HOXC11O43248 AC023141.5-201ENST00000458585 616 ntBASIC17.37■□□□□ 0.37
HOXC11O43248 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.37■□□□□ 0.37
HOXC11O43248 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HOXC11O43248 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HOXC11O43248 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.37■□□□□ 0.37
HOXC11O43248 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.37■□□□□ 0.37
HOXC11O43248 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
HOXC11O43248 AC093028.1-201ENST00000622998 982 ntBASIC17.37■□□□□ 0.37
HOXC11O43248 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.37■□□□□ 0.37
HOXC11O43248 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HOXC11O43248 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HOXC11O43248 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.37■□□□□ 0.37
HOXC11O43248 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.37■□□□□ 0.37
HOXC11O43248 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HOXC11O43248 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HOXC11O43248 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.36■□□□□ 0.37
HOXC11O43248 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
HOXC11O43248 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HOXC11O43248 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms