Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PHGDHO43175 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PHGDHO43175 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PHGDHO43175 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.1■□□□□ 0.33
PHGDHO43175 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 AC018695.7-201ENST00000624587 2492 ntBASIC17.1■□□□□ 0.33
PHGDHO43175 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
PHGDHO43175 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PHGDHO43175 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
PHGDHO43175 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.1■□□□□ 0.33
PHGDHO43175 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.1■□□□□ 0.33
PHGDHO43175 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 PCED1CP-201ENST00000419887 785 ntBASIC17.1■□□□□ 0.33
PHGDHO43175 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.1■□□□□ 0.33
PHGDHO43175 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PHGDHO43175 TOB2P1-201ENST00000469761 992 ntBASIC17.1■□□□□ 0.33
PHGDHO43175 AC096582.2-201ENST00000510860 516 ntBASIC17.1■□□□□ 0.33
PHGDHO43175 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.1■□□□□ 0.33
PHGDHO43175 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.1■□□□□ 0.33
PHGDHO43175 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PHGDHO43175 AP002414.4-201ENST00000589764 1148 ntBASIC17.1■□□□□ 0.33
PHGDHO43175 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.1■□□□□ 0.33
PHGDHO43175 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PHGDHO43175 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PHGDHO43175 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PHGDHO43175 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.1■□□□□ 0.33
PHGDHO43175 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PHGDHO43175 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.1■□□□□ 0.33
PHGDHO43175 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PHGDHO43175 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PHGDHO43175 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PHGDHO43175 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.09■□□□□ 0.33
PHGDHO43175 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.09■□□□□ 0.33
PHGDHO43175 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.09■□□□□ 0.33
PHGDHO43175 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PHGDHO43175 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PHGDHO43175 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 MINOS1P3-201ENST00000457048 203 ntBASIC17.09■□□□□ 0.33
PHGDHO43175 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.09■□□□□ 0.33
PHGDHO43175 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.09■□□□□ 0.33
PHGDHO43175 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
PHGDHO43175 BNIP3P18-201ENST00000593976 575 ntBASIC17.09■□□□□ 0.33
PHGDHO43175 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
PHGDHO43175 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.09■□□□□ 0.33
PHGDHO43175 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.09■□□□□ 0.33
PHGDHO43175 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.09■□□□□ 0.33
PHGDHO43175 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PHGDHO43175 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PHGDHO43175 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PHGDHO43175 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PHGDHO43175 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PHGDHO43175 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PHGDHO43175 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PHGDHO43175 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PHGDHO43175 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PHGDHO43175 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PHGDHO43175 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.08■□□□□ 0.33
PHGDHO43175 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.08■□□□□ 0.33
PHGDHO43175 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PHGDHO43175 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
PHGDHO43175 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PHGDHO43175 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PHGDHO43175 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.08■□□□□ 0.32
PHGDHO43175 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.08■□□□□ 0.32
PHGDHO43175 NSUN5P1-202ENST00000421140 1535 ntBASIC17.08■□□□□ 0.32
PHGDHO43175 FRMD8P1-201ENST00000440433 1524 ntBASIC17.08■□□□□ 0.32
PHGDHO43175 NSUN5P2-203ENST00000457352 1529 ntBASIC17.08■□□□□ 0.32
PHGDHO43175 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.08■□□□□ 0.32
PHGDHO43175 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms