Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC21.58■■□□□ 1.05
NPHP1O15259 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC21.58■■□□□ 1.05
NPHP1O15259 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.58■■□□□ 1.05
NPHP1O15259 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC21.58■■□□□ 1.05
NPHP1O15259 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.58■■□□□ 1.05
NPHP1O15259 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP1O15259 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP1O15259 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP1O15259 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP1O15259 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
NPHP1O15259 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP1O15259 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP1O15259 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
NPHP1O15259 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP1O15259 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP1O15259 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC21.58■■□□□ 1.04
NPHP1O15259 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP1O15259 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
NPHP1O15259 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC21.57■■□□□ 1.04
NPHP1O15259 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.57■■□□□ 1.04
NPHP1O15259 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC21.57■■□□□ 1.04
NPHP1O15259 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
NPHP1O15259 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.57■■□□□ 1.04
NPHP1O15259 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
NPHP1O15259 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
NPHP1O15259 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 ENSA-206ENST00000361631 725 ntTSL 2 BASIC21.57■■□□□ 1.04
NPHP1O15259 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC21.57■■□□□ 1.04
NPHP1O15259 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
NPHP1O15259 RNA5SP421-201ENST00000516864 134 ntBASIC21.57■■□□□ 1.04
NPHP1O15259 INO80C-206ENST00000586489 594 ntTSL 3 BASIC21.57■■□□□ 1.04
NPHP1O15259 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
NPHP1O15259 Z92544.3-201ENST00000624747 417 ntBASIC21.57■■□□□ 1.04
NPHP1O15259 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
NPHP1O15259 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC21.57■■□□□ 1.04
NPHP1O15259 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP1O15259 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.57■■□□□ 1.04
NPHP1O15259 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP1O15259 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC21.56■■□□□ 1.04
NPHP1O15259 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP1O15259 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP1O15259 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP1O15259 AL355306.1-201ENST00000415580 579 ntBASIC21.56■■□□□ 1.04
NPHP1O15259 AC087163.2-201ENST00000457299 853 ntBASIC21.56■■□□□ 1.04
NPHP1O15259 SLBP-205ENST00000488267 987 ntTSL 2 BASIC21.56■■□□□ 1.04
NPHP1O15259 AC093520.2-201ENST00000561830 333 ntBASIC21.56■■□□□ 1.04
NPHP1O15259 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC21.56■■□□□ 1.04
NPHP1O15259 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC21.56■■□□□ 1.04
NPHP1O15259 AC138761.1-201ENST00000584393 385 ntBASIC21.56■■□□□ 1.04
NPHP1O15259 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP1O15259 AMT-250ENST00000637682 1823 ntTSL 5 BASIC21.56■■□□□ 1.04
NPHP1O15259 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP1O15259 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP1O15259 F11R-206ENST00000621309 4770 ntTSL 5 BASIC21.56■■□□□ 1.04
NPHP1O15259 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
NPHP1O15259 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.56■■□□□ 1.04
NPHP1O15259 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP1O15259 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
NPHP1O15259 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP1O15259 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP1O15259 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP1O15259 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.56■■□□□ 1.04
NPHP1O15259 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.56■■□□□ 1.04
NPHP1O15259 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP1O15259 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC21.55■■□□□ 1.04
NPHP1O15259 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
NPHP1O15259 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
NPHP1O15259 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP1O15259 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP1O15259 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP1O15259 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
NPHP1O15259 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.55■■□□□ 1.04
NPHP1O15259 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP1O15259 PMS2P4-201ENST00000412466 1052 ntBASIC21.55■■□□□ 1.04
NPHP1O15259 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP1O15259 AL592309.1-201ENST00000443127 649 ntBASIC21.55■■□□□ 1.04
NPHP1O15259 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP1O15259 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
NPHP1O15259 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC21.55■■□□□ 1.04
NPHP1O15259 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP1O15259 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
NPHP1O15259 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP1O15259 AC009093.7-201ENST00000623853 1223 ntBASIC21.55■■□□□ 1.04
NPHP1O15259 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP1O15259 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP1O15259 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms