Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 AL022342.1-201ENST00000400363 863 ntBASIC20.23■□□□□ 0.83
RNF41Q9H4P4 ATP6V0CP3-201ENST00000417255 467 ntBASIC20.23■□□□□ 0.83
RNF41Q9H4P4 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 AC106730.1-201ENST00000566722 1090 ntBASIC20.23■□□□□ 0.83
RNF41Q9H4P4 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF41Q9H4P4 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 AC087163.2-201ENST00000457299 853 ntBASIC20.22■□□□□ 0.83
RNF41Q9H4P4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 AC034105.1-201ENST00000563488 319 ntBASIC20.22■□□□□ 0.83
RNF41Q9H4P4 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 AC010654.1-201ENST00000615722 808 ntBASIC20.22■□□□□ 0.83
RNF41Q9H4P4 AC004790.2-201ENST00000623588 572 ntBASIC20.22■□□□□ 0.83
RNF41Q9H4P4 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 PKD1P1-201ENST00000458669 6805 ntBASIC20.22■□□□□ 0.83
RNF41Q9H4P4 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RNF41Q9H4P4 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 MIR4751-201ENST00000578027 74 ntBASIC20.21■□□□□ 0.83
RNF41Q9H4P4 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF41Q9H4P4 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF41Q9H4P4 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms