Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AP006288.1-201ENST00000446065 395 ntBASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 AC012317.2-201ENST00000623305 2251 ntBASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 PRORSD1P-202ENST00000563365 2154 ntBASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 AC005829.1-201ENST00000570002 483 ntBASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 C20orf181-201ENST00000623918 480 ntBASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 AC134684.3-201ENST00000641758 218 ntBASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 AC139713.2-201ENST00000641328 2723 ntBASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAIPQ9BWF2 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 MKNK2P1-201ENST00000437526 628 ntBASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAIPQ9BWF2 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms