Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.4■□□□□ 0.38
CHFRQ96EP1 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 TFAMP1-201ENST00000412727 736 ntBASIC17.4■□□□□ 0.38
CHFRQ96EP1 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 FAM86C2P-203ENST00000528684 1004 ntBASIC17.4■□□□□ 0.38
CHFRQ96EP1 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 AL355312.1-201ENST00000407115 2176 ntBASIC17.4■□□□□ 0.38
CHFRQ96EP1 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHFRQ96EP1 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.4■□□□□ 0.38
CHFRQ96EP1 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CHFRQ96EP1 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.39■□□□□ 0.38
CHFRQ96EP1 AL354751.1-201ENST00000412768 1863 ntBASIC17.39■□□□□ 0.38
CHFRQ96EP1 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
CHFRQ96EP1 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 AL592309.1-201ENST00000443127 649 ntBASIC17.39■□□□□ 0.37
CHFRQ96EP1 FAM86GP-201ENST00000448322 971 ntBASIC17.39■□□□□ 0.37
CHFRQ96EP1 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 DUX4L17-201ENST00000557360 1267 ntBASIC17.39■□□□□ 0.37
CHFRQ96EP1 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 AL135744.1-201ENST00000565098 629 ntBASIC17.39■□□□□ 0.37
CHFRQ96EP1 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHFRQ96EP1 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CHFRQ96EP1 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms