Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC116Q8IYX3 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 AC009053.2-201ENST00000563701 2365 ntBASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 CROCCP1-201ENST00000426910 5675 ntBASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC116Q8IYX3 EGFEM1P-202ENST00000431685 1563 ntBASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 RBM17P3-201ENST00000417687 1192 ntBASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC116Q8IYX3 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CCDC116Q8IYX3 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.21■□□□□ 0.18
CCDC116Q8IYX3 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
CCDC116Q8IYX3 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 AL121761.2-201ENST00000598007 1648 ntBASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 PRYP5-201ENST00000451909 266 ntBASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC116Q8IYX3 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms