Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CR383656.2-201ENST00000548656 2254 ntBASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 AC007191.1-201ENST00000623179 2995 ntBASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 RER1-204ENST00000378518 522 ntTSL 3 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 AC091874.3-201ENST00000512672 1195 ntBASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 AC005829.2-201ENST00000571422 1056 ntBASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 AC112777.1-201ENST00000540175 1423 ntBASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC28AQ8IWP9 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
CCDC28AQ8IWP9 AC092364.2-201ENST00000596710 2692 ntBASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 PPP1R14BP2-201ENST00000426284 444 ntBASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 RHEB-204ENST00000472642 900 ntTSL 3 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 KRT18P16-201ENST00000510337 1294 ntBASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 BET1L-207ENST00000529614 560 ntTSL 5 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 AC133041.1-202ENST00000642053 222 ntBASIC14.39□□□□□ -0.11
CCDC28AQ8IWP9 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms