Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 AC010203.1-204ENST00000548782 407 ntBASIC16.62■□□□□ 0.25
RNF220Q5VTB9 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF220Q5VTB9 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.61■□□□□ 0.25
RNF220Q5VTB9 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 LIN28AP1-201ENST00000429574 405 ntBASIC16.61■□□□□ 0.25
RNF220Q5VTB9 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 AC012306.2-201ENST00000609350 630 ntBASIC16.61■□□□□ 0.25
RNF220Q5VTB9 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 AL023973.1-201ENST00000624619 620 ntBASIC16.61■□□□□ 0.25
RNF220Q5VTB9 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 AC022898.2-201ENST00000616822 1312 ntBASIC16.61■□□□□ 0.25
RNF220Q5VTB9 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.61■□□□□ 0.25
RNF220Q5VTB9 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.61■□□□□ 0.25
RNF220Q5VTB9 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 AC113347.1-201ENST00000413321 391 ntBASIC16.6■□□□□ 0.25
RNF220Q5VTB9 ATP5G1P1-201ENST00000448724 379 ntBASIC16.6■□□□□ 0.25
RNF220Q5VTB9 RASA4DP-201ENST00000460726 1199 ntBASIC16.6■□□□□ 0.25
RNF220Q5VTB9 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 COX11P1-201ENST00000489116 835 ntBASIC16.6■□□□□ 0.25
RNF220Q5VTB9 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 AC073912.3-201ENST00000624414 853 ntBASIC16.6■□□□□ 0.25
RNF220Q5VTB9 AC097493.4-201ENST00000641197 219 ntBASIC16.6■□□□□ 0.25
RNF220Q5VTB9 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF220Q5VTB9 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms