Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GPR53P-205ENST00000457298 1084 ntBASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 RNF165-205ENST00000588679 2904 ntBASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 SPCS2P4-201ENST00000436160 681 ntBASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 AL390961.4-201ENST00000623958 2535 ntBASIC20.8■□□□□ 0.92
CCDC88AQ3V6T2 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CCDC88AQ3V6T2 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC88AQ3V6T2 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC88AQ3V6T2 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC88AQ3V6T2 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC88AQ3V6T2 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC88AQ3V6T2 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC88AQ3V6T2 AC012317.2-201ENST00000623305 2251 ntBASIC20.8■□□□□ 0.92
CCDC88AQ3V6T2 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 KRT17P7-201ENST00000451704 1104 ntBASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 KRT8P23-201ENST00000560090 1207 ntBASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 AC004233.3-201ENST00000607794 1269 ntBASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 AL139327.4-201ENST00000612362 153 ntBASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 AL512638.1-201ENST00000457493 794 ntBASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 AC027307.2-201ENST00000591252 911 ntBASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
CCDC88AQ3V6T2 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 NEFHP1-201ENST00000412845 2629 ntBASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC88AQ3V6T2 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 LY6E-204ENST00000519546 971 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms