Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.95■□□□□ 0.79
CCDC144BQ3MJ40 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 AC004967.1-201ENST00000453589 447 ntBASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 AC134684.3-201ENST00000641758 218 ntBASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC144BQ3MJ40 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 DUTP2-201ENST00000519164 463 ntBASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 AL589182.2-201ENST00000619332 1049 ntBASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 AC022898.2-201ENST00000616822 1312 ntBASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CCDC144BQ3MJ40 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 URGCP-206ENST00000446958 365 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 KRT18P2-201ENST00000447938 1258 ntBASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 MTDHP5-201ENST00000598980 586 ntBASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms