Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
HSPG2P98160 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
HSPG2P98160 MTND6P24-201ENST00000440466 518 ntBASIC10.47□□□□□ -0.73
HSPG2P98160 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC10.47□□□□□ -0.73
HSPG2P98160 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
HSPG2P98160 MIR3615-201ENST00000581999 87 ntBASIC10.47□□□□□ -0.73
HSPG2P98160 5S_rRNA.22-201ENST00000614916 106 ntBASIC10.47□□□□□ -0.73
HSPG2P98160 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC10.47□□□□□ -0.73
HSPG2P98160 AP000997.3-201ENST00000623333 2250 ntBASIC10.47□□□□□ -0.73
HSPG2P98160 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC10.47□□□□□ -0.73
HSPG2P98160 SLC22A20-204ENST00000530038 1673 ntBASIC10.47□□□□□ -0.73
HSPG2P98160 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC10.47□□□□□ -0.73
HSPG2P98160 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
HSPG2P98160 AC046185.3-201ENST00000623228 1824 ntBASIC10.47□□□□□ -0.73
HSPG2P98160 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
HSPG2P98160 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC10.47□□□□□ -0.73
HSPG2P98160 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC10.47□□□□□ -0.73
HSPG2P98160 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 IGHJ2P-201ENST00000454480 60 ntBASIC10.47□□□□□ -0.73
HSPG2P98160 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
HSPG2P98160 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
HSPG2P98160 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC10.47□□□□□ -0.73
HSPG2P98160 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC10.47□□□□□ -0.73
HSPG2P98160 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC10.47□□□□□ -0.73
HSPG2P98160 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
HSPG2P98160 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC10.47□□□□□ -0.73
HSPG2P98160 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC10.46□□□□□ -0.73
HSPG2P98160 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC10.46□□□□□ -0.73
HSPG2P98160 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC10.46□□□□□ -0.73
HSPG2P98160 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC10.46□□□□□ -0.73
HSPG2P98160 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC10.46□□□□□ -0.73
HSPG2P98160 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC10.46□□□□□ -0.73
HSPG2P98160 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 RN7SL618P-201ENST00000477850 296 ntBASIC10.46□□□□□ -0.73
HSPG2P98160 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 AC123567.1-201ENST00000548294 1261 ntBASIC10.46□□□□□ -0.73
HSPG2P98160 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC10.46□□□□□ -0.73
HSPG2P98160 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC10.46□□□□□ -0.73
HSPG2P98160 AC025048.3-201ENST00000590609 569 ntBASIC10.46□□□□□ -0.73
HSPG2P98160 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC10.46□□□□□ -0.73
HSPG2P98160 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC10.46□□□□□ -0.73
HSPG2P98160 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC10.46□□□□□ -0.73
HSPG2P98160 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.73
HSPG2P98160 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.73
HSPG2P98160 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
HSPG2P98160 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
HSPG2P98160 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC10.46□□□□□ -0.74
HSPG2P98160 AL353732.1-201ENST00000569618 1459 ntBASIC10.46□□□□□ -0.74
HSPG2P98160 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC10.46□□□□□ -0.74
HSPG2P98160 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC10.46□□□□□ -0.74
HSPG2P98160 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC10.46□□□□□ -0.74
HSPG2P98160 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC10.46□□□□□ -0.74
HSPG2P98160 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
HSPG2P98160 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
HSPG2P98160 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC10.46□□□□□ -0.74
HSPG2P98160 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC10.46□□□□□ -0.74
HSPG2P98160 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC10.46□□□□□ -0.74
HSPG2P98160 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
HSPG2P98160 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
HSPG2P98160 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
HSPG2P98160 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
HSPG2P98160 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
HSPG2P98160 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
HSPG2P98160 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC10.45□□□□□ -0.74
HSPG2P98160 KRT8P19-201ENST00000551916 1455 ntBASIC10.45□□□□□ -0.74
HSPG2P98160 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC10.45□□□□□ -0.74
HSPG2P98160 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
HSPG2P98160 RNU1-129P-201ENST00000384064 167 ntBASIC10.45□□□□□ -0.74
HSPG2P98160 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC10.45□□□□□ -0.74
HSPG2P98160 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC10.45□□□□□ -0.74
HSPG2P98160 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC10.45□□□□□ -0.74
HSPG2P98160 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC10.45□□□□□ -0.74
HSPG2P98160 U1.21-201ENST00000580816 167 ntBASIC10.45□□□□□ -0.74
HSPG2P98160 AC093726.1-201ENST00000608064 963 ntBASIC10.45□□□□□ -0.74
HSPG2P98160 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC10.45□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms