Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A4P53420 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.19■□□□□ 0.5
COL4A4P53420 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.19■□□□□ 0.5
COL4A4P53420 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A4P53420 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A4P53420 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
COL4A4P53420 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A4P53420 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.19■□□□□ 0.5
COL4A4P53420 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL4A4P53420 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A4P53420 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A4P53420 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A4P53420 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A4P53420 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.18■□□□□ 0.5
COL4A4P53420 AC022494.1-201ENST00000466044 728 ntBASIC18.18■□□□□ 0.5
COL4A4P53420 ALG1L8P-201ENST00000533887 760 ntBASIC18.18■□□□□ 0.5
COL4A4P53420 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A4P53420 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
COL4A4P53420 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.18■□□□□ 0.5
COL4A4P53420 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.18■□□□□ 0.5
COL4A4P53420 AL606495.2-201ENST00000605867 535 ntBASIC18.18■□□□□ 0.5
COL4A4P53420 IGHV3-72-202ENST00000621503 303 ntBASIC18.18■□□□□ 0.5
COL4A4P53420 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL4A4P53420 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A4P53420 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A4P53420 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A4P53420 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A4P53420 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A4P53420 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL4A4P53420 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A4P53420 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A4P53420 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL4A4P53420 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.18■□□□□ 0.5
COL4A4P53420 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL4A4P53420 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.18■□□□□ 0.5
COL4A4P53420 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.18■□□□□ 0.5
COL4A4P53420 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.18■□□□□ 0.5
COL4A4P53420 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL4A4P53420 AC046185.3-201ENST00000623228 1824 ntBASIC18.18■□□□□ 0.5
COL4A4P53420 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A4P53420 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A4P53420 AC116353.5-201ENST00000638148 1699 ntBASIC18.18■□□□□ 0.5
COL4A4P53420 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.18■□□□□ 0.5
COL4A4P53420 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
COL4A4P53420 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A4P53420 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A4P53420 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A4P53420 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A4P53420 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A4P53420 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A4P53420 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A4P53420 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
COL4A4P53420 AL135999.2-201ENST00000622438 1686 ntBASIC18.17■□□□□ 0.5
COL4A4P53420 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.17■□□□□ 0.5
COL4A4P53420 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A4P53420 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A4P53420 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A4P53420 AC241585.1-201ENST00000433527 519 ntBASIC18.17■□□□□ 0.5
COL4A4P53420 U91328.1-201ENST00000437528 223 ntBASIC18.17■□□□□ 0.5
COL4A4P53420 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.17■□□□□ 0.5
COL4A4P53420 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.17■□□□□ 0.5
COL4A4P53420 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A4P53420 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.17■□□□□ 0.5
COL4A4P53420 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.17■□□□□ 0.5
COL4A4P53420 AC009118.2-201ENST00000613275 655 ntBASIC18.17■□□□□ 0.5
COL4A4P53420 AC084121.4-201ENST00000641598 221 ntBASIC18.17■□□□□ 0.5
COL4A4P53420 AF228730.8-201ENST00000642140 221 ntBASIC18.17■□□□□ 0.5
COL4A4P53420 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A4P53420 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.17■□□□□ 0.5
COL4A4P53420 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A4P53420 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL4A4P53420 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A4P53420 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A4P53420 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A4P53420 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A4P53420 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A4P53420 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A4P53420 AL133373.2-201ENST00000623187 2828 ntBASIC18.16■□□□□ 0.5
COL4A4P53420 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A4P53420 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A4P53420 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A4P53420 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A4P53420 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A4P53420 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A4P53420 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.16■□□□□ 0.5
COL4A4P53420 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL4A4P53420 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A4P53420 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.16■□□□□ 0.5
COL4A4P53420 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A4P53420 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.16■□□□□ 0.5
COL4A4P53420 AL161645.1-201ENST00000622716 1255 ntBASIC18.16■□□□□ 0.5
COL4A4P53420 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.16■□□□□ 0.5
COL4A4P53420 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A4P53420 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A4P53420 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A4P53420 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A4P53420 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A4P53420 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A4P53420 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
COL4A4P53420 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms