Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
MSH6P52701 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC23.52■■□□□ 1.36
MSH6P52701 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
MSH6P52701 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
MSH6P52701 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
MSH6P52701 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
MSH6P52701 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC23.52■■□□□ 1.36
MSH6P52701 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.35
MSH6P52701 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC23.52■■□□□ 1.35
MSH6P52701 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.35
MSH6P52701 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC23.52■■□□□ 1.35
MSH6P52701 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
MSH6P52701 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
MSH6P52701 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
MSH6P52701 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH6P52701 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
MSH6P52701 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC23.51■■□□□ 1.35
MSH6P52701 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
MSH6P52701 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC23.51■■□□□ 1.35
MSH6P52701 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
MSH6P52701 AL035456.1-201ENST00000456064 1369 ntBASIC23.51■■□□□ 1.35
MSH6P52701 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
MSH6P52701 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
MSH6P52701 POR-209ENST00000439269 1858 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH6P52701 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
MSH6P52701 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
MSH6P52701 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC23.51■■□□□ 1.35
MSH6P52701 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH6P52701 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC23.51■■□□□ 1.35
MSH6P52701 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH6P52701 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
MSH6P52701 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
MSH6P52701 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH6P52701 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
MSH6P52701 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC23.5■■□□□ 1.35
MSH6P52701 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC23.5■■□□□ 1.35
MSH6P52701 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC23.5■■□□□ 1.35
MSH6P52701 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC23.5■■□□□ 1.35
MSH6P52701 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC23.5■■□□□ 1.35
MSH6P52701 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC23.5■■□□□ 1.35
MSH6P52701 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 AC087499.6-201ENST00000411576 835 ntBASIC23.5■■□□□ 1.35
MSH6P52701 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC23.5■■□□□ 1.35
MSH6P52701 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC23.5■■□□□ 1.35
MSH6P52701 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC23.5■■□□□ 1.35
MSH6P52701 APOC4-201ENST00000591600 348 ntTSL 3 BASIC23.5■■□□□ 1.35
MSH6P52701 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH6P52701 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.5■■□□□ 1.35
MSH6P52701 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC23.49■■□□□ 1.35
MSH6P52701 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH6P52701 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC23.49■■□□□ 1.35
MSH6P52701 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC23.49■■□□□ 1.35
MSH6P52701 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC23.49■■□□□ 1.35
MSH6P52701 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
MSH6P52701 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
MSH6P52701 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC23.49■■□□□ 1.35
MSH6P52701 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
MSH6P52701 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH6P52701 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH6P52701 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
MSH6P52701 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH6P52701 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC23.49■■□□□ 1.35
MSH6P52701 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH6P52701 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
MSH6P52701 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH6P52701 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC23.49■■□□□ 1.35
MSH6P52701 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
MSH6P52701 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
MSH6P52701 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC23.49■■□□□ 1.35
MSH6P52701 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
MSH6P52701 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH6P52701 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC23.49■■□□□ 1.35
MSH6P52701 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC23.48■■□□□ 1.35
MSH6P52701 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC23.48■■□□□ 1.35
MSH6P52701 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
MSH6P52701 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH6P52701 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC23.48■■□□□ 1.35
MSH6P52701 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC23.48■■□□□ 1.35
MSH6P52701 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH6P52701 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH6P52701 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
MSH6P52701 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC23.48■■□□□ 1.35
MSH6P52701 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH6P52701 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
MSH6P52701 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC23.48■■□□□ 1.35
MSH6P52701 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH6P52701 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC23.48■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms