Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC15.14■□□□□ 0.01
CX3CR1P49238 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC15.14■□□□□ 0.01
CX3CR1P49238 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.14■□□□□ 0.01
CX3CR1P49238 AP002383.4-201ENST00000442518 975 ntBASIC15.14■□□□□ 0.01
CX3CR1P49238 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CX3CR1P49238 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC15.14■□□□□ 0.01
CX3CR1P49238 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.14■□□□□ 0.01
CX3CR1P49238 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC15.14■□□□□ 0.01
CX3CR1P49238 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.14■□□□□ 0.01
CX3CR1P49238 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
CX3CR1P49238 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CX3CR1P49238 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC15.14■□□□□ 0.01
CX3CR1P49238 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CX3CR1P49238 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CX3CR1P49238 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CX3CR1P49238 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CX3CR1P49238 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CX3CR1P49238 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CX3CR1P49238 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
CX3CR1P49238 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CX3CR1P49238 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CX3CR1P49238 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CX3CR1P49238 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.14■□□□□ 0.01
CX3CR1P49238 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CX3CR1P49238 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC15.14■□□□□ 0.01
CX3CR1P49238 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CX3CR1P49238 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.14■□□□□ 0.01
CX3CR1P49238 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CX3CR1P49238 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CX3CR1P49238 AC092053.1-201ENST00000605787 1936 ntBASIC15.13■□□□□ 0.01
CX3CR1P49238 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
CX3CR1P49238 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.13■□□□□ 0.01
CX3CR1P49238 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.13■□□□□ 0.01
CX3CR1P49238 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.13■□□□□ 0.01
CX3CR1P49238 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
CX3CR1P49238 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.13■□□□□ 0.01
CX3CR1P49238 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 CCS-201ENST00000310190 942 ntTSL 5 BASIC15.13■□□□□ 0.01
CX3CR1P49238 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC15.13■□□□□ 0.01
CX3CR1P49238 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC15.13■□□□□ 0.01
CX3CR1P49238 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 KRT17P6-201ENST00000453795 1220 ntBASIC15.13■□□□□ 0.01
CX3CR1P49238 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC15.13■□□□□ 0.01
CX3CR1P49238 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC15.13■□□□□ 0.01
CX3CR1P49238 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 IL11-204ENST00000590625 1028 ntTSL 2 BASIC15.13■□□□□ 0.01
CX3CR1P49238 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
CX3CR1P49238 AC106886.4-201ENST00000623557 2502 ntBASIC15.13■□□□□ 0.01
CX3CR1P49238 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
CX3CR1P49238 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.13■□□□□ 0.01
CX3CR1P49238 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.13■□□□□ 0.01
CX3CR1P49238 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CX3CR1P49238 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CX3CR1P49238 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CR1P49238 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CX3CR1P49238 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CR1P49238 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CR1P49238 NSUN5P1-202ENST00000421140 1535 ntBASIC15.12■□□□□ 0.01
CX3CR1P49238 NSUN5P2-203ENST00000457352 1529 ntBASIC15.12■□□□□ 0.01
CX3CR1P49238 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.12■□□□□ 0.01
CX3CR1P49238 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CR1P49238 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CX3CR1P49238 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CR1P49238 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CR1P49238 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CX3CR1P49238 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CX3CR1P49238 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CR1P49238 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CR1P49238 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CX3CR1P49238 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CR1P49238 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CR1P49238 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CR1P49238 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CX3CR1P49238 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms