Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LHX1P48742 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.14■□□□□ 0.49
LHX1P48742 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LHX1P48742 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LHX1P48742 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LHX1P48742 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.14■□□□□ 0.49
LHX1P48742 DNAJB3-201ENST00000446806 729 ntBASIC18.14■□□□□ 0.49
LHX1P48742 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.14■□□□□ 0.49
LHX1P48742 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.14■□□□□ 0.49
LHX1P48742 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.14■□□□□ 0.49
LHX1P48742 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.14■□□□□ 0.49
LHX1P48742 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.14■□□□□ 0.49
LHX1P48742 AC023141.13-201ENST00000604991 943 ntBASIC18.14■□□□□ 0.49
LHX1P48742 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.14■□□□□ 0.49
LHX1P48742 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.14■□□□□ 0.49
LHX1P48742 AC004877.2-201ENST00000623941 599 ntBASIC18.14■□□□□ 0.49
LHX1P48742 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LHX1P48742 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.14■□□□□ 0.49
LHX1P48742 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LHX1P48742 LINC02012-201ENST00000608206 1725 ntBASIC18.14■□□□□ 0.49
LHX1P48742 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LHX1P48742 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LHX1P48742 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LHX1P48742 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.14■□□□□ 0.49
LHX1P48742 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
LHX1P48742 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LHX1P48742 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LHX1P48742 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LHX1P48742 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LHX1P48742 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LHX1P48742 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
LHX1P48742 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.13■□□□□ 0.49
LHX1P48742 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
LHX1P48742 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LHX1P48742 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LHX1P48742 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.13■□□□□ 0.49
LHX1P48742 YBX2P1-201ENST00000394192 760 ntBASIC18.13■□□□□ 0.49
LHX1P48742 MCCD1P2-201ENST00000423228 335 ntBASIC18.13■□□□□ 0.49
LHX1P48742 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.13■□□□□ 0.49
LHX1P48742 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LHX1P48742 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.13■□□□□ 0.49
LHX1P48742 ACTL9-202ENST00000612068 1252 ntBASIC18.13■□□□□ 0.49
LHX1P48742 REXO1L3P-201ENST00000622202 1288 ntBASIC18.13■□□□□ 0.49
LHX1P48742 BCAR1-209ENST00000546196 1340 ntBASIC18.13■□□□□ 0.49
LHX1P48742 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.13■□□□□ 0.49
LHX1P48742 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
LHX1P48742 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.13■□□□□ 0.49
LHX1P48742 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.13■□□□□ 0.49
LHX1P48742 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LHX1P48742 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LHX1P48742 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LHX1P48742 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LHX1P48742 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.13■□□□□ 0.49
LHX1P48742 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LHX1P48742 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LHX1P48742 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.13■□□□□ 0.49
LHX1P48742 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.13■□□□□ 0.49
LHX1P48742 FRMD8P1-201ENST00000440433 1524 ntBASIC18.13■□□□□ 0.49
LHX1P48742 PP12613-201ENST00000424958 2230 ntBASIC18.13■□□□□ 0.49
LHX1P48742 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LHX1P48742 AL023806.1-201ENST00000603994 1649 ntBASIC18.12■□□□□ 0.49
LHX1P48742 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LHX1P48742 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.12■□□□□ 0.49
LHX1P48742 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LHX1P48742 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
LHX1P48742 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LHX1P48742 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.12■□□□□ 0.49
LHX1P48742 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LHX1P48742 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
LHX1P48742 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
LHX1P48742 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
LHX1P48742 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
LHX1P48742 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LHX1P48742 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.12■□□□□ 0.49
LHX1P48742 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.12■□□□□ 0.49
LHX1P48742 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.12■□□□□ 0.49
LHX1P48742 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.12■□□□□ 0.49
LHX1P48742 AC107918.2-201ENST00000530817 355 ntBASIC18.12■□□□□ 0.49
LHX1P48742 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.12■□□□□ 0.49
LHX1P48742 KRT19P2-202ENST00000557173 1012 ntBASIC18.12■□□□□ 0.49
LHX1P48742 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LHX1P48742 AC092865.6-201ENST00000642101 219 ntBASIC18.12■□□□□ 0.49
LHX1P48742 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
LHX1P48742 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LHX1P48742 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.12■□□□□ 0.49
LHX1P48742 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LHX1P48742 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.12■□□□□ 0.49
LHX1P48742 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.12■□□□□ 0.49
LHX1P48742 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.12■□□□□ 0.49
LHX1P48742 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LHX1P48742 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
LHX1P48742 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.11■□□□□ 0.49
LHX1P48742 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.11■□□□□ 0.49
LHX1P48742 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.11■□□□□ 0.49
LHX1P48742 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 166.4 ms